BAC Information

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BAC

Clone NameMSMg01-317H10
Chromosome2 (Build37)
Map Location 129,139,507 - 129,139,781
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a
Downstream geneIl1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317H10.T7 (MSMg01no317_h10.b1)MSMg01-317H10.TJ (MSMg01no317_h10.g1)
ACCAG437522AG437523
length733736
length of high quality
(start - end)
239 (75 - 313)276 (78 - 353)
definitionCHROMAT_FILE: MSMg01no317_h10.b1 PHD_FILE: MSMg01no317_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:28 2005CHROMAT_FILE: MSMg01no317_h10.g1 PHD_FILE: MSMg01no317_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAGACCGC
GGAATTCTCCCTTATCTACAGAGGGTCACAGAAGTGATGTCTGGTTCCTG
AAACTGGACTATGATGTGTGTACGCTGGTTTTGTGTGTCAACTTGACACA
AGCTAGAGTTATTACAGAGACAGGATCCTCCCTTGAGGAAATGCCTCCAC
TAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGTGGGAGAG
TCTGTTGTGGGTAGTGCCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAG
AAAGCAAGCTGAGATATTTTTTTAGAAAGCAAGCCAGTAAGAAACATCCC
TCCATGACCTCTGTATCAGCTCCCGCCTCCCCACCTGCTTGAGTTCCGAT
TCTGACTTCCTTTGGTGACCCACCCCAATGTGAAAGTGTAAACTGAGTAG
ACCCTTTCCTCCCCAATTTGCTTCTTGGTCATGATGTTTGTGCAGGAATA
GAAACCCTGACTAAGACAATGTGCTTTTGGGGGAGGGGCTTGTCTTCATG
TTGTAGGTATGTTCCCCAGAATTGCAGCATCCCTGACAAATTAATATTTC
CACCAAGCATGGAAAGGGAGACTCCCTCCCCACAGGTGGTATAATTGATT
ATTGCATAGGTCATGCCTAGGGTATTGCCTAAGGATTGCCTCTACCCATG
CATGCAATCTTGTGTGACCCTGCCTGTTCAACT
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACTATGTTCTTTCTGGCTGT
GAGCGTTTACAGAGTTTGACACCCATGAGGATGTAGGGATCCTGAAATTA
ACTATTCACTTGTCTACCTCAAGGGAGAGGTGTTCAGAGGCACAAACATG
AAGAGACAAGTGAGCTATCTGTGTCCATTCATGCCCTACTTAGTTTTAAT
TCCATGACAGTTAGGCAGGAGGAAAGGATGTCCATAACACCTTATTGGCT
TCCAGGTTTTACAATGTTTTTTTAACTTAATCCTCTCATCAGACCAGAGA
GGNAGGTCTNCCCTTCACACCCCGNAGACGAGGCCCTAGAGTTCTAGCAA
AATTAAGTAACCAGCCCGACCCCCCAAAATAAACAGAATGCGGAGAGGGG
GGGCAGACTTCAGACTATACTCAACCACAAAGCTGTCTCTGTGTCTTAAT
GTAGCCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAC
ACACACACACACACACACACACACACACACACCACACACACACACACACA
CACACACACACAGATTTTACAAAGAATGAAGGCAATCTATGATGCTTCTG
AACTTTTTTTTTTCTTTCTGTCATTTACATCAAGTGAGCAACACCAGCTG
TGGTCTCTGATCTCCTGAAAGCTGACAATGAAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_h10.g1 MSMg01no317_h10.g1 CHROMAT_FILE:
MSMg01no317_h10.g1 PHD_FILE: MSMg01no317_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:29 2005
         (276 letters)



>mm_chr2_129139307_129139982
          Length = 676

 Score =  478 bits (247), Expect = e-139
 Identities = 268/275 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagactatgttctttctggctgtgagcgtttacagagtttgacacccatgaggatgtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||
Sbjct: 201 aagactatgttctttctggctgtgagcgtttacagagtttgacattcatgaggacgtagg 260

                                                                       
Query: 61  gatcctgaaattaactattcacttgtctacctcaagggagaggtgttcagaggcacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcctgaaattaactattcacttgtctacctcaagggagaggtgttcagaggcacaaac 320

                                                                       
Query: 121 atgaagagacaagtgagctatctgtgtccattcatgccctacttagttttaattccatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagagacaagtgagctatctgtgtccattcatgccctacttagttttaattccatga 380

                                                                       
Query: 181 cagttaggcaggaggaaaggatgtccataacaccttattggcttccaggttttacaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttaggcaggaggaaaggatgtccataacaccttattggcttccaggttttacaatgt 440

                                              
Query: 241 ttttttaacttaatcctctcatcagaccagagagg 275
           |   | |||||||||||||||||||||||||||||
Sbjct: 441 tacctcaacttaatcctctcatcagaccagagagg 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)