BAC Information

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BAC

Clone NameMSMg01-317J10
Chromosome2 (Build37)
Map Location 172,778,858 - 172,779,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317J10.T7 (MSMg01no317_j10.b1)MSMg01-317J10.TJ (MSMg01no317_j10.g1)
ACCAG437613AG437614
length751772
length of high quality
(start - end)
282 (79 - 360)203 (73 - 275)
definitionCHROMAT_FILE: MSMg01no317_j10.b1 PHD_FILE: MSMg01no317_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:37 2005CHROMAT_FILE: MSMg01no317_j10.g1 PHD_FILE: MSMg01no317_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCGTCCCTTTTCGAGACCTGAGCACCCTGCAGAGGACCCATGAAG
CTGCACTGAAGCCCACCCCAGACCCCAACCCAGAACCCAGCTCTGAGCCC
TAAGTCACTGGGTCCCATGATGATTTTGTTACACAGTTGTATACGTGAGT
GCTGACTCTAGACCCAGGAGAGGGGACAGAGCAGGAGCTCAAGGTTACCC
AAGAACCAAAGGGGACTATGGGAAGGGGACTGAGGAAAGTCTGGAGCAGC
AGAAGCCCGGAAGCTTTTTTTTTTAGATGGCGCTACCTTAGACCGGGTGT
TAGAGGCAGTTTTTTGTTATCCCTGTACATGACCCGGNTGGGCTCTGTAT
TCCCGAGGGTGGAGCTCACCCCCTCCCAAATAANTTGGGTGCATAGGGAT
GAAGACAAGTGCTACCGTTTGCAACCGCGAGCAGTGGGGTGGATAGGGGC
AGCATCGTTTGCAACCGCGAGCAGTGGCGTGTGTAGGGCCAGCATCGTTT
GCACTCGCGAGCAATGTCTCGGGTAGGGGCAGTTCCATTTATTTTACCTT
TTCCTAGATTGTCTCTCTATAGTCCCCCCCACCCTTCGCCCTTTTTGTTT
CTTCCTTCTCACCTCCGTTGCCTTCGTGTTCGCATCATTAACCCTTTTGC
TTAATTCTTTTCCCCTCCCCTTTATCTTTAGCTCTATGTTTTATCGCTCT
A
CCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGCGAAATTCTTTCCTTCAAGGGGACAAGAACCAAG
AGATACAGCCTAGGTGGTGGCGGGTGGTGGCACACGCCTTAAGTCCCAGT
CCTCAGGGGATGGGAGGAGCAGAGAGTGGATCTCTGAGTTTGAGGCCAGT
CTGGTCTACAGAGCAAGTTCTAGGACAGCCAGAGCTAGACAAAAATCCTA
TCTTCGGGGGGTTGGGGTGGGGTGGNNNNNANNNNTNNNNNANNNNNNNN
NNNNNNNNNNNNTTTTTTTTTTTANAANAANAAAAAAAAAAAAAAAAAAA
AAAAATTTTTTTTTTTTACCCCCCAACAAATCCCCCTTTTTTTTTTTTAA
TTTATTTTTTTTTTTTTTTTCGCCCCCCCACCAAAAAAAAAAATAGGGGG
GGGGGGGGGGGGGGTGTTTTACCCTTTATTTTCCTCTTCCCCTTTTATGC
GCTATATTCCGCCTTATTTTCCCTTTAATCTTTTCCATCCTTCTTTTTTT
TATTCTTTTTTTACCTGCCTTCCGCATTTATCCGTATTTTTTTACCCATG
TGGAGCACTCTCAGCATTCGGTTTTTTTTAACCTCTTCTTTAAACCCTTT
TTCCTTTCCCATCCCCTATACTATAGTTTTGCTCTATCATTGTCTGTTTT
GCGAATTTTCCCTTTCTGTCTCTCCCTTGTTTCTTCGTTTAGTCCGCCCT
CTTATTTCTTTTTGCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_j10.b1 MSMg01no317_j10.b1 CHROMAT_FILE:
MSMg01no317_j10.b1 PHD_FILE: MSMg01no317_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:37 2005
         (282 letters)



>mm_chr2_172778658_172779339
          Length = 682

 Score =  445 bits (230), Expect = e-129
 Identities = 268/288 (93%), Gaps = 14/288 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgcagaggacccatgaagctgcactgaagcccaccccagaccccaacccagaaccc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgcagaggacccatgaagctacactgaagcccaccccagaccccaacccagaaccc 260

                                                                       
Query: 61  agctctgagccctaagtcactgggtcccatgatgattttgttacacagttgtatacgtga 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttctgagccctaagtcactgggtcccatgatgattttgttacacagttgtatacgtga 320

                                                                       
Query: 121 gtgctgactctagacccaggagaggggacagagcaggagctcaaggttacccaagaacca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctgactctagacccaggagagggaacagagcaggagctcaaggttacccaagaacca 380

                                                                       
Query: 181 aaggggactatgggaaggggactgaggaaagtctggagcagcagaagcccggaagctt-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  
Sbjct: 381 aaggggactatgggaaggggactgaggaaagtctggagcagcagaagaccggaagcttca 440

                                                           
Query: 239 ---tttttttt--agatggcgctaccttagaccgggtgttagaggcag 281
              |         ||||||| |||||||||||||||||| ||||||||
Sbjct: 441 gagt-------ggagatggcactaccttagaccgggtgtcagaggcag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)