BAC Information

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BAC

Clone NameMSMg01-317M22
Chromosome2 (Build37)
Map Location 142,938,629 - 142,939,297
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317M22.T7 (MSMg01no317_m22.b1)MSMg01-317M22.TJ (MSMg01no317_m22.g1)
ACCAG437775AG437776
length717714
length of high quality
(start - end)		670 (48 - 717)635 (78 - 712)
definitionCHROMAT_FILE: MSMg01no317_m22.b1 PHD_FILE: MSMg01no317_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:51 2005CHROMAT_FILE: MSMg01no317_m22.g1 PHD_FILE: MSMg01no317_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGACGAATACCGAATGGCAGAGAAACACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACAGCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCTAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAATGGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTCACAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGAAACTCACACAACATGTACTCACTGATAAGTGGATATTAGCCCCAAAC
CTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAA
GAAGAATGAAGACTGAA

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGTCAAATTTTCAGATACA
ATAAAAATACCTTCAGTTACCTGAAAAGCTTGGATTTTCTTCATATATAT
TGGTGAAGGCAACTGAATGGTTGAAGTGATGGCTCAGGAGTCAAGAGCCC
TCATTGCTCTTGCAGAGATTCAGGGTTTGGTCCTCAGTACCTACAGGGCA
GTTTACCGTCATCCAGAACTTCAGCTCCAGAGGCTCAGATGTGCATTTTT
GATCTCCACAGCTACCAGGAATGTATGTAATGCAAGCAAAACACCCCCAC
AAATAAAAACAAAGCAAGCAAACAGAAATGCTCCCAAACACAATAATGAG
ACAGATTGAATTGTGGAATCACATATGAAATCTCTCTCTCTTCTCTCTCC
CCATATATATGCATATCCATTCTTTCAATATGTTAAGTAATATATAGTTA
TATATAATGATATATATGTATATATGTACATATATGTGTATATATGTACA
TATATGTGTATATATGTATATATGCATATATATGCACATAAAACCTCAAG
GCATATATTACACTTTTTTTTTTTTTACTAATTTTACAATTTGGAGAACA
ATATTCTTATTTAAATTATTTACATTTATATGGGATTAATTGTTGTTACT
CTCCTACATAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_m22.g1 MSMg01no317_m22.g1 CHROMAT_FILE:
MSMg01no317_m22.g1 PHD_FILE: MSMg01no317_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
         (635 letters)



>mm_chr2_142938429_142939463
          Length = 1035

 Score = 1073 bits (555), Expect = 0.0
 Identities = 623/675 (92%), Gaps = 46/675 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgtcaaattttcagatacaataaaaataccttcagttacctgaaaagcttggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgtcaaattttcagatacaataaaaataccttcagttacctgaaaagcttggattt 260

                                                                       
Query: 61  tcttcatatatattggtgaaggcaactgaatggttgaagtgatggctcaggagtcaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcatatatattggtgaaggcaactgaatggttgaagtgatggctcaggagtcaagag 320

                                                                       
Query: 121 ccctcattgctcttgcagagattcagggtttggtcctcagtacctacagggcagtttacc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ccctcattgctcttgcagagattcagggtttggtcctcagcacctacagggcagtttacc 380

                                                                       
Query: 181 gtcatccagaacttcagctccagaggctcagatgtgcatttttgatctccacagctacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatccagaacttcagctccagaggctcagatgtgcatttttgatctccacagctacca 440

                                                                       
Query: 241 ggaatgtatgtaatgcaagcaaaacacccccacaaataaaaacaaagcaagcaaacagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatgtatgtaatgcaagcaaaacacccccacaaataaaaacaaagcaagcaaacagaa 500

                                                                       
Query: 301 atgctcccaaacacaataatgagacagattgaattgtggaatcacatatgaaatctctct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 atgctcccaaacacaataatgagacagattgaattgtggaatcagatatgaaatctctct 560

                                                                       
Query: 361 ctcttctctctccccatatatatgcatatccattctttcaatatgttaagtaatatatag 420
           |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctctcctctctctccatatatatgcatatccattctttcaatatgttaggtaatatatag 620

                                                                       
Query: 421 ttatatataatgatatatatgtatatatgtacatatatgtgtatatatgtaca------- 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 621 ttatatataatgatatatatgtatatatgtacatatatgtgtatatatgtacacatatgt 680

                                                                       
Query: 474 ---------------------------------tatatgtgtatatatgtatatatgcat 500
                                            |||||||||||||||||||||||||||
Sbjct: 681 gtatatatgtacatatatgtgtatatatgtacatatatgtgtatatatgtatatatgcat 740

                                                                       
Query: 501 atatatgcacataaaacctcaaggcatatattacactttttttttttttactaattttac 560
           |||||||||||||||||||||||||||||||||||||||||||      | |||||||||
Sbjct: 741 atatatgcacataaaacctcaaggcatatattacacttttttt------aataattttac 794

                                                                       
Query: 561 aatttggagaacaatattcttatttaaattatttacatttatatgggattaattgttgtt 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aatttggagaacaatattcttatttaaattatttacatttatatgggattaattgttgtt 854

                          
Query: 621 actctcctacataaa 635
           |||||||||||||||
Sbjct: 855 actctcctacataaa 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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