BAC Information

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BAC

Clone NameMSMg01-317P23
Chromosome2 (Build37)
Map Location 110,171,044 - 110,171,644
singlet/doubletsinglet
Overlap genenone
Upstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1
Downstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317P23.T7 (MSMg01no317_p23.b1)MSMg01-317P23.TJ (MSMg01no317_p23.g1)
ACCAG437913AG437914
length745749
length of high quality
(start - end)		603 (45 - 647)350 (70 - 419)
definitionCHROMAT_FILE: MSMg01no317_p23.b1 PHD_FILE: MSMg01no317_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:05 2005CHROMAT_FILE: MSMg01no317_p23.g1 PHD_FILE: MSMg01no317_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAGGATGCCGAAAACAGGGAAGTGATGGTATAGTGTGTGAATTC
ATTAGGATGAGGAGAAAAAAAACAACAAATTATGGGAGCAATTAAAATAT
CAGCATCTTTTAGGTGTTGTCCAAAATATTTGCTGGACCTTACCTCCGAA
ATTAGAACACTTTCTTTTATTTACTTTCTATTTTTATTAGACAGCTGTAA
TCCAAAACATGAGTTCCCTTACCAGACTTTCCGAAACTACAGCTTATAAA
AAGCAAGAGTTATTCAAAGGGGTTTCTGAACAGAGTCTAGGTCAAAAACT
GCAGTAAATGTTCCCTAGCCAAGCATATTTATAATAGAAGTGCACCCGTA
GACATACAAGTATGGCCCCGCCGGGGTGAGCTTGGAGATTTCAAAAACCC
ATTGCAGGTCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACA
CACACACACAAAATCTATCTTGTACACAGCTAATTCTCTTCCATCATACC
TGCCATGCTCCCAACCATGATAATAATGGAATAACTCTCTGAAGCTAGCC
GGGCATGGTGGCACACACCTTTAATCCTATAAGCAAGCCTCTAGCTAAAT
GCTTTCTTTTATAAGAGTAGTCTTGGTCATAGTGTTTCTTCACAG

AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCAAAATTCCTTGATCCACTTAGACTTGAGCTTTGT
ACAAAGAGATAAGAATGGATCACTTTGAATTCTTCTACCTGCTAACCACC
AGTTGAGCCAGCACCATTTGTTAAAAATGCTATCTTTTTTCTGCTGGATG
GTTTTAGCTTCTTTGTCAAAGATCAAGTGACCATAGATGTGTGGGTTCAT
TTCTGGGTCTTCAATTCTATTCCATTGATCTATCTGTCTGTCATTGTACC
AGTACCATGCAGTTTTTATTACAATTGCTTAGTAGTATGGCTCAGAGTAC
CCAAGATACAATTTGCAAAACATATGAAACTCAAGAGGAAGGAATACCAA
AGTGTGGACACTTAGATCCCCCCCACAAGGGGGAACAAAATACCCATGGA
AGAAGTTACAGAGACAAAGTTCGGAGCAGAGACTGAAGGAATGACCATCC
AGAGACTGCCCTACATGGGAATCCATCCCAAAAACAACCAGCAAAACCAG
ACGGTATTGCGGATGCCAACAAGAGCTTACTGATTTGTTGTTGTTGTTGT
TGTTGTTGTTTTTGAGACAGGGTTTCTCTGTGTAACTCTGGCATTCATGT
CCTGGAACTCACTCTGTAGACCAGGATAGCCTCGAACTCAAAAATCTCCT
TGTCTCTGCCTCCTAATTGCTAGGATCAAAGACATGTGCCACCACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_p23.b1 MSMg01no317_p23.b1 CHROMAT_FILE:
MSMg01no317_p23.b1 PHD_FILE: MSMg01no317_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:05 2005
         (603 letters)



>mm_chr2_110171026_110172028
          Length = 1003

 Score = 1058 bits (547), Expect = 0.0
 Identities = 587/601 (97%), Gaps = 2/601 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaggatgccgaaaacagggaagtgatggtatagtgtgtgaattcattaggat 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaattcattaggatgaggaaaacagggaagtgatggtatagtgtgtgaattcattaggat 560

                                                                       
Query: 65  gaggagaaaaaaaacaacaaattatgggagcaattaaaatatcagcatcttttaggtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaggagaaaaaaaacaacaaattatgggagcaattaaaatatcagcatcttttaggtgtt 500

                                                                       
Query: 125 gtccaaaatatttgctggaccttacctccgaaattagaacactttcttttatttactttc 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 gtccaaaatatttgctggaccttacctccaaaattagaacactttcttttatttactttc 440

                                                                       
Query: 185 tatttttattagacagctgtaatccaaaacatgagttcccttaccagactttccgaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatttttattagacagctgtaatccaaaacatgagttcccttaccagactttccgaaact 380

                                                                       
Query: 245 acagcttataaaaagcaagagttattcaaaggggtttctgaacagagtctaggtcaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acagcttataaaaagcaagagttattcaaaggggtttctgaacagagtctaggtcaaaaa 320

                                                                       
Query: 305 ctgcagtaaatgttccctagccaagcatatttataatagaagtgcacccgtagacataca 364
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 319 ctgcagtaaatgttccctagccaagcatatttataataaaagtgtacccgtagacataca 260

                                                                       
Query: 365 agtatggccccgccggggtgagcttggagatttcaaaaacccattgcaggtccagtctct 424
           |||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtatggccttgttggggtgagcttggagatttcaaaaacccattgcaggtccagtctct 200

                                                                       
Query: 425 ctctctctctctctctctctctctctctctctctctctctctctcacacac--acacaca 482
           ||||||||||||||||||||||||||||||||||||||||||||| | | |  |||||||
Sbjct: 199 ctctctctctctctctctctctctctctctctctctctctctctctctctctcacacaca 140

                                                                       
Query: 483 cacacacacacacacacacacacacacacacacaaaatctatcttgtacacagctaattc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cacacacacacacacacacacacacacacacacaaaatctatcttgtacacagctaattc 80

                                                                       
Query: 543 tcttccatcatacctgccatgctcccaaccatgataataatggaataactctctgaagct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tcttccatcatacctgccatgctcccaaccatgataataatggaataactctctgaagct 20

            
Query: 603 a 603
           |
Sbjct: 19  a 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 128
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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