BAC Information

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BAC

Clone NameMSMg01-318B08
Chromosome2 (Build37)
Map Location 173,313,896 - 173,314,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B08.T7 (MSMg01no318_b08.b1)MSMg01-318B08.TJ (MSMg01no318_b08.g1)
ACCAG437978AG437979
length763981
length of high quality
(start - end)
250 (79 - 328)144 (73 - 216)
definitionCHROMAT_FILE: MSMg01no318_b08.b1 PHD_FILE: MSMg01no318_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:11 2005CHROMAT_FILE: MSMg01no318_b08.g1 PHD_FILE: MSMg01no318_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCGCATCGGCGG
AATTCTACCACCAAGCTTCCTTCAAAGACCTCTTATTACTCTTTTGAGAC
AGGATCTCACCAAGTTGCCCAGACTGACTTCAGACTCACTGTATACCCAG
ACAAGCCTTGAACTTGCCATCCTCCTGCCTCAGCCTCCTAAGTAGCTGAG
ATGCACACCTGCACCTCAAGGCTGGAACATCTTAAAATTCCAATATGTAA
AATAGGGGTTTGGGGGAGAGAAGGAGAACAAAGATTCTCATTTGGCTTTC
TGCTGCCAATGCTGAAATAATTTGAGAAAGATTATTAAAGCATCATTAGG
GACCAGTTGCCACTGTCCCCTCATGTCTTTGCTGAATCCTGGCTGTTAAG
GTGATTGGCATCTGGAATTTTCTCCCCCCCCACCGNCTATGTGGATGGGG
GCCAGTTGATGGGACCAGTGGTCTTCCAAGAGAAGAAAAGGGGAAATATC
ACCCCAGAGGTCACTTTCCTCAAAAGCACAATGGAAAAGCCACATGAAGA
CAGCAGATAGGCAGCTGCCTACATCCCCAGGCATTGGGTCACTATACAGC
AGCCCTGCAGGAAGCCTGAACTTAGCCTAAACTCCTGATGGCCGATGCAG
GACACACTCACTGCATCTTTAATAAGCAGGGTTGGCCACATGCCTGATGG
TAATCTGGCTGAAATATGGAAGAGAAATAAACACTGGGCCAAAGTTATAG
AGTCTGTAATATA
AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTATCGAGTGA
CCTATAGAAGGATTCTCTCCAATTCTTTCCTGTAAGGCAAGTGACAGCCA
CAGCTGCTGACAGCAGGGACCTTGGGCACAGTTCAGTAGATACAGGACAT
GTATGGATGGATGTGTGTGTGTGTGTGAGTTTGTATATGTGTGTATGTGT
AAATGTATATGTGTTTCAAATATTTCTTTTTTCTACACCCTTCCCTTATT
TATATAATCCATCTTTTCAAATACTTTAATATTTTCTTTTTTTTTAATTT
TTCTTTTCTCTCACTATTTTCTATTTCACAACTTTTTTTTTTTTTATCTA
TCTCTCCAACCAATACCTTTTATTATTCTTATTTACCTTTCCCCACCCCC
CTTAATATTTTCTCAATTATCTCGTTCACTTTTTGTATTTTTTTGGTCAC
GAACAAGCGCCTGTTCAAAANATAATTTTATATTTTATATTCTCTACCTT
TATACTATCTTCTTCATTATATTATCTTTCTTTATACAACCAAATATAAT
ATTACACTCATCTTTCCTCTCCTCAAGCCCATTTCTCACTATTCCTCCTT
TCCTTTCTACTTCTTTTAATCCTTTCTTTCCCCCTCTATATCCTTTATAT
CTTCTTTATTCCCCCCCTCTCCACTCTACGTTTCATTTTCTCTCTTTTCT
ACTTTATCTCTTCCTTTCCTCCTCTCATCTCTTTTCCATATATCTTTTTA
TTTACTTCTATCTTACTATATATTTTTTCCTTTCACCTTCCCTCTATCTC
TCATTTTATACTGTATACTTCTACAAATTTCCTATATTTCTAATCATTCT
ATCTATCTTTTTTTTATTATCATCCATTTCACCTTCTTCTACTCTACTAC
CACCCTCTTTTTTTCTCTCTCTCTTCCCTTTTTCCATTCTATTAATACCC
CTATCATTTTCTTTCCTATCTTTTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b08.b1 MSMg01no318_b08.b1 CHROMAT_FILE:
MSMg01no318_b08.b1 PHD_FILE: MSMg01no318_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:11 2005
         (250 letters)



>mm_chr2_173313696_173314345
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcttattactcttttgagacaggatctcaccaagttgcccagactgacttcagactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcttattactcttttgagacaggatctcaccaagttgcccagactgacttcagactca 260

                                                                       
Query: 61  ctgtatacccagacaagccttgaacttgccatcctcctgcctcagcctcctaagtagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtatacccagacaagccttgaacttgccatcctcctgcctcagcctcctaagtagctg 320

                                                                       
Query: 121 agatgcacacctgcacctcaaggctggaacatcttaaaattccaatatgtaaaatagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgcacacctgcacctcaaggctggaacatcttaaaattccaatatgtaaaatagggg 380

                                                                       
Query: 181 tttgggggagagaaggagaacaaagattctcatttggctttctgctgccaatgctgaaat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgggggagagaaggagaacaaagattctcatttggctttctgctgccaatgctgaaat 440

                     
Query: 241 aatttgagaa 250
           ||||||||||
Sbjct: 441 aatttgagaa 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)