BAC Information

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BAC

Clone NameMSMg01-318C10
Chromosome2 (Build37)
Map Location 50,160,454 - 50,160,798
singlet/doubletsinglet
Overlap genenone
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318C10.T7 (MSMg01no318_c10.b1)MSMg01-318C10.TJ (MSMg01no318_c10.g1)
ACCAG438027AG438028
length725725
length of high quality
(start - end)
350 (68 - 417)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no318_c10.b1 PHD_FILE: MSMg01no318_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:16 2005CHROMAT_FILE: MSMg01no318_c10.g1 PHD_FILE: MSMg01no318_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAGTCTGTTCCTGAATTCCTTGCTTTACAGGGTGGATTCCATCTTAAAG
AGAGAAGAAACTCTTCTTTCTTTAAGTTGTTTTTGTCAGGTGCTTTGCCA
CAGTGATGAGCAAAGTAGCTAGCAGCATGGATATTACCTTTAGATACATG
CAGACAGAAGCCATCTCCTAGGCAACTCCACATCTTGGCAGGGTGATGTT
ATTAATGATAAGCAGAGATGTAACAGTTAATGGACAACCTGGTGTGACTA
TTACAGCCTAGCTTTAGATTTGTGAGTCACAAACTAAAAACAAACAGACA
AACATTAACTCTTAGGCTTCTCTTCACAGTGTCCCAACAGTACAACGTCC
ACTGTGATTTATCCCCCACACCCTTGCCATCTATCAAGAACAGACTAGAA
AATACAAGGTGCTTTCTTCCAGGTCAGCTGTGGGTTTCCTATAAGAAACT
GAAGTGCATGCTGTCTCAGTGTGTCAGTACTAGAGGGCTGCTGGCGCTTC
TGTGCAGGTCATGTTAAAGATGGATTTCCAAAGGCCGAGTTCTGTGATCG
GGACAAACGAAAAAATCGTGCTAGACTTTTCTTTTAAAATTCTTACTATT
GTCATCCTTATTTTACTGGAGTCCAGTAAAAGTTCAATAAAACCTTCATT
AAAACAACACAGAATGCTTTCTCTA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCTCAGAAATTCTCTGTTTAGACTTGTACTTCATTTTAAAATT
GTTTAAAGATTATCAGATCATTAGATAATCTAATTATCAGATTATTTAGT
TTGTTGATGTCTAGTTTCTTGAATTCTTTATATATTTCGAATATTACCTC
TCTGACAGAAGTGGAGTTGGTAAAACATCTTTTCCCATTCTGTAGGCTGC
CATTTTGCCCTATTGATGATGGTTTTTGCCTTACAGGACCTTTTTTGTTT
TCATGAGGTCCCGTTTATTATATTGTTCATCTTAGTGCTTGTGTAATTGA
CATTCTGTTTTTTTAGTTATCCCCTGCGCCCACACACTCAAGGCTATTCC
CCACTCTCTCTTCTCCCACCCCCAATATTTTGGGTTTTGATCCACTTAGA
CTTGAGTTTTGTGCATGGTGATAAATATGGATCAATTTGCATTCTTCTAC
ATGCAGACATCCAGCTAGTCTTGTACCATTTGTTGAAGATACTTTCCTTT
TTCCATTGCATATTTATGAATTATTTTTTTTAAAAAATCCCGTGTCTATA
GGTGTGTCCATTTACATCTGAATCTTCGGTTTAATTTCATTGATCAAACT
GTCTGTTTCTGTGCCAGCGCCATGTATTTTTTATCACTATATCCCTGTTT
TATGCCTTGAAATCACTTATGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_c10.b1 MSMg01no318_c10.b1 CHROMAT_FILE:
MSMg01no318_c10.b1 PHD_FILE: MSMg01no318_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:16 2005
         (350 letters)



>mm_chr2_50160150_50160899
          Length = 750

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttgctttacagggtggattccatcttaaagagagaagaaactcttctttctttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tccttgctttacagggtggattccatcttaaagagagaagaaactcttctttctttaagt 590

                                                                       
Query: 61  tgtttttgtcaggtgctttgccacagtgatgagcaaagtagctagcagcatggatattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgtttttgtcaggtgctttgccacagtgatgagcaaagtagctagcagcatggatattac 530

                                                                       
Query: 121 ctttagatacatgcagacagaagccatctcctaggcaactccacatcttggcagggtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctttagatacatgcagacagaagccatctcctaggcaactccacatcttggcagggtgat 470

                                                                       
Query: 181 gttattaatgataagcagagatgtaacagttaatggacaacctggtgtgactattacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttattaatgataagcagagatgtaacagttaatggacaacctggtgtgactattacagc 410

                                                                       
Query: 241 ctagctttagatttgtgagtcacaaactaaaaacaaacagacaaacattaactcttaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 409 ctagctttagatttgtgagtcacaaactaaaaacaaacagacaaacattaactcaaaggc 350

                                                        
Query: 301 ttctcttcacagtgtcccaacagtacaacgtccactgtgatttat 345
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 349 ttctcttcagagtgtcccaacagtacaacgtccactgtgatttat 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)