BAC Information

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BAC

Clone NameMSMg01-318C22
Chromosome2 (Build37)
Map Location 124,188,261 - 124,188,558
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318C22.T7 (MSMg01no318_c22.b1)MSMg01-318C22.TJ (MSMg01no318_c22.g1)
ACCAG438050AG438051
length744752
length of high quality
(start - end)
297 (429 - 725)68 (57 - 124)
definitionCHROMAT_FILE: MSMg01no318_c22.b1 PHD_FILE: MSMg01no318_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:18 2005CHROMAT_FILE: MSMg01no318_c22.g1 PHD_FILE: MSMg01no318_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGAAG
ATTCCCTCTGCTGAATTAAAGTTTCCGACCAGATTCTTACTTAGACATAG
ATCAAAATTTAACCTTTGAACTCTCTGTCTGTTTAGAGAAATATAAGAGG
ATGAAATGAAGATAAGTAATCTGAATACCACTTAAAGCACACTGGACACT
CAGATTGTCTACTGCTTTGTACTGACCTTTTTTTTTTTTTTAAACAGGTG
ACAACAAATTTAGTTCTGTATAAAATGTATTCTCTTAATAACTGAATAAG
TCTAGAGTTACTGGCAATCCACAATAGCAGGACAGTTGTGCATCATCTAC
TTTTTTTTATGATTTCCCACCCCCCGACAAGAGAAGCAAGCTAAAGAAAG
AAAGGCTGCCCCCCACTGGAGAGAGTGTCATGGTCACTGGGTGAGTACCG
CTGCAAGTGGCCCAGTACTGCAACAGGGCACTGCAGTGCTCTCCTGACCT
CACTGATGCTGAGAATCACTGCAGTCTGCAGTGCTTTGCTGAGTATATAG
AGTATGATGGTTCACACAAGCTCATCTTCTTCTAAGGTTCAATTATTTGG
AAAAAAAAAAAAGCCCCTTCCCCTCGAAAAGATGGAGCTTTCTGATCCAC
GAATCATCTTTACACTGTGCATTTGACTTGTTATCAACTTCTGGTAGACA
GTGTATCTGAGGTTCTACCTCACTGGGTAGTGTATCTTTGGCTT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTG
CGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCGCTCTCTCTCTCTCTC
TCTCTCTTTCTTTCTTACATACATATTTTTTTTTAAAGCATGTTCTTTTA
AAAATACAGAGGTCTTGGGGAGAAATGTTTTATATGGAAGGAGTTAGAAG
AAAGGTGTGGACACTTCCTACCCTACACGTGCCCTTAACATCAGCAGCAA
CTTACATTATTTTAGTGAGTGCACTTACTATTGTTAGAGGGACTCTAATA
TTTTTTTTTCCACCCCCCCCCCCCCGCCTAGATGTCCACAGTTTTCGTGT
TTTTCCCCCCCCCCCAAAAAAAAAAAAATAGGAGCGGGGGGGAGGACATG
CACATGAAGTCTGTGTGTGTTTGTGTCCGGGTATGTGTTGATCTCTAAAG
TTTGACTAAGGATGATGACCGTGAAAGTTATTGAAGGAAAATTCTGTCAC
ACATTTTCGTTTAAACGAACCTTTGGACCTGGTGAGATGACTCACCGAGG
AGTGGAAGCAAGTATATGCTGATAGCTTGGGAGTGAGACTATCAGGAGTG
GGGGATTGGGTGGGGAATAGGGGGCAATTGTAGGGAGTATGGGGGATATT
GGGTGTTAGTGGTTATTTTTTAAGACACTTCAATAATTTACTTGGGGGGT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_c22.b1 MSMg01no318_c22.b1 CHROMAT_FILE:
MSMg01no318_c22.b1 PHD_FILE: MSMg01no318_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:18 2005
         (297 letters)



>mm_chr2_124188061_124188758
          Length = 698

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggtcactgggtgagtaccgctgcaagtggcccagtactgcaacagggcactgcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggtcactgggtgagtaccgctgcaagtggcccagtactgcaacagggcactgcagtg 260

                                                                       
Query: 61  ctctcctgacctcactgatgctgagaatcactgcagtctgcagtgctttgctgagtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcctgacctcactgatgctgagaatcactgcagtctgcagtgctttgctgagtatat 320

                                                                       
Query: 121 agagtatgatggttcacacaagctcatcttcttctaaggttcaattatttggaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtatgatggttcacacaagctcatcttcttctaaggttcaattatttggaaaaaaaa 380

                                                                       
Query: 181 aaaa-gccccttcccctcgaaaagatggagctttctgatccacgaatcatctttacactg 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagccccttcccctcgaaaagatggagctttctgatccacgaatcatctttacactg 440

                                                                     
Query: 240 tgcatttgacttgttatcaacttctggtagacagtgtatctgaggttctacctcactg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatttgacttgttatcaacttctggtagacagtgtatctgaggttctacctcactg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)