BAC Information

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BAC

Clone NameMSMg01-318E01
Chromosome2 (Build37)
Map Location 77,045,385 - 77,116,051
singlet/doubletdoublet
Overlap geneSestd1
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
Downstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E01.T7 (MSMg01no318_e01.b1)MSMg01-318E01.TJ (MSMg01no318_e01.g1)
ACCAG438103AG438104
length705720
length of high quality
(start - end)		371 (46 - 416)335 (76 - 410)
definitionCHROMAT_FILE: MSMg01no318_e01.b1 PHD_FILE: MSMg01no318_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:24 2005CHROMAT_FILE: MSMg01no318_e01.g1 PHD_FILE: MSMg01no318_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,045,385 - 77,045,752)(77,115,717 - 77,116,051)
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATAAAGCCCAGCAGGAACAATATCACCAAGCGTCACCTGTTAC
TAAGTTACAACAGAGAATCTGAGAGTAGATGTACATTGGCTTAAACCTAT
ATTTGGGACAGTTCTCACAAAGTGGGCACAGATATTCCCATCTCTTGCTG
GGATGGCCGCATAGTGAAGAGCAATCTGTCTCTTACAGTGCACTTCTGCT
AACACAGGGCTGACACACACTCAGTTTTAAATGATTATGCATTCTTTTTA
TAATTATATAAACATACAATATAAGGAAACCCTGTGCCTTTCCTTCTGTT
AATTTTCAAAGCAGCTTTTCTGTATCATCCTAGATGTATTTGCTTCAGCC
AGCTCCTAAGATCCAAGCGCCCCCCATCCTGTGATTTTTCACTAAGCACT
AAACTACAATACTGTAGCGATTTTCCATGTGCAAACTATGATGTCTAATA
AGTTTACAAACCTCGTTTTAAGCAGGCCACCCTTTGCCTGTTTCTCGCTA
ACTGTCCAATCAATCAACCCATTCATCATAATACGCACTGTTATTGTATT
GATGTTCAATACTCCACCTCCTTGGACATATATCCATTGGATCCTTCTTC
CCCCATGATGAATAAGCTCATGATTACCGCTCACCTTTATACTTCAGTCC
TGTTA

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCGGTCACATGGTGAAGACTGCGTT
TTGAGGGACCATTAAACTGTTTCCCGTAGCTGCCGTACACTGGCATTCTC
ACCACTAATGTGTGAAGGTTCTGTTTTCTTCAGTTAATTTATTTTTGATG
TGGTATTGGTGTTGATGCTCAGAATCTTACACATGCAGGCATTTTACCAG
CTGAGCCACACCCCTGACCCGAGGGTTCCTCTTTTCCATAGTTTTACTGC
TAATGTTTGTTTTATTTGATGAGCCCTGCCAGTCCTAATGGCTGTCAAGT
GATGTGGTTTTTATTTGCATTTCACCTTATGTTTCTATTACTATTTGCAT
GTTTTCTTTGAAGAATGCCCACCCCCTTATGCCCGCGTGGGCATTTTCAT
ATTTAATCCCTAAATTGCTCTACCATGTATGTAGACTTTACGAGGTTTAC
TGTCATGCGCCGAATGAGTCTATGATTTGCTCGTTTTTAAATCTCACTCC
TATAGACCGAGTCTGTCCTTTTGACTTGACTCCTTCCTGCATCCTTTCTG
CTCCTATGATGCTTGCACAAGCCTCTATTCTGCATTGCTTAATGATCGCT
CATGACTGCGTGTTTTATCCCGATCCTTATCCTATTGTCATCACGTGGTT
TTGTCCCTCCCTGTCTTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e01.b1 MSMg01no318_e01.b1 CHROMAT_FILE:
MSMg01no318_e01.b1 PHD_FILE: MSMg01no318_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:24 2005
         (371 letters)



>mm_chr2_77045182_77045952
          Length = 771

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaataaagcccagcaggaacaatatcaccaagcgtcacctgttactaagttac 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaataaagccgagcaggaacaatatcaccaagcgtcacctgttactaagttac 263

                                                                       
Query: 64  aacagagaatctgagagtagatgtacattggcttaaacctatatttgggacagttctcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacagagaatctgagagtagatgtacattggcttaaacctatatttgggacagttctcac 323

                                                                       
Query: 124 aaagtgggcacagatattcccatctcttgctgggatggccgcatagtgaagagcaatctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagtgggcacagatattcccatctcttgctgggatggccgcatagtgaagagcaatctg 383

                                                                       
Query: 184 tctcttacagtgcacttctgctaacacagggctgacacacactcagttttaaatgattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctcttacagtgcacttctgctaacacagggctgacacacactcagttttaaatgattat 443

                                                                       
Query: 244 gcattctttttataattatataaacatacaatataaggaaaccctgtgcctttccttctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcattctttttataattatataaacatacaatataaggaaaccctgtgcctttccttctg 503

                                                                       
Query: 304 ttaattttcaaagcagcttttctgtatcatcctagatgtatttgcttcagccagctccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaattttcaaagcagcttttctgtatcatcctagatgtatttgcttcagccagctccta 563

                   
Query: 364 agatccaa 371
           ||||||||
Sbjct: 564 agatccaa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no318_e01.g1 MSMg01no318_e01.g1 CHROMAT_FILE:
MSMg01no318_e01.g1 PHD_FILE: MSMg01no318_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:24 2005
         (335 letters)



>mm_chr2_77115410_77116144
          Length = 735

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccggtcacatggtgaagactgcgttttgagggaccattaaactgtttcccgtagctgccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccggtcacatggtgaagactgcgttttgagggaccattaaactgtttcccgtagctgccg 583

                                                                       
Query: 61  tacactggcattctcaccactaatgtgtgaaggttctgttttcttcagttaatttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tacactggcattctcaccactaatgtgtgaaggttctgttttcttcagttaatttatttt 523

                                                                       
Query: 121 tgatgtggtattggtgttgatgctcagaatcttacacatgcaggcattttaccagctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgatgtggtattggtgttgatgctcagaatcttacacatgcaggcattttaccagctgag 463

                                                                       
Query: 181 ccacacccctgacccgagggttcctcttttccatagttttactgctaatgtttgttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccacacccctgacccgagggttcctcttttccatagttttactgctaatgtttgttttat 403

                                                                       
Query: 241 ttgatgagccctgccagtcctaatggctgtcaagtgatgtggtttttatttgcatttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttgatgagccctgccagtcctaatggctgtcaagtgatgtggtttttatttgcatttcac 343

                                              
Query: 301 cttatgtttctattactatttgcatgttttctttg 335
           ||||||||||||||| |||||||||||||||||||
Sbjct: 342 cttatgtttctattagtatttgcatgttttctttg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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