BAC Information

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BAC

Clone NameMSMg01-318L13
Chromosome2 (Build37)
Map Location 126,270,988 - 126,271,204
singlet/doubletsinglet
Overlap genenone
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318L13.T7 (MSMg01no318_l13.b1)MSMg01-318L13.TJ (MSMg01no318_l13.g1)
ACCAG438445AG438446
length773767
length of high quality
(start - end)
334 (72 - 405)244 (132 - 375)
definitionCHROMAT_FILE: MSMg01no318_l13.b1 PHD_FILE: MSMg01no318_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:57 2005CHROMAT_FILE: MSMg01no318_l13.g1 PHD_FILE: MSMg01no318_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTCCAGTGTTTTACCAATGCTGGACACTAGGATGTCACCTTGGGA
ATGGACACTGCTCCCATTAGCATCCTCCTTATTTCCTTTCCACAAAATAG
TACAGATAAAATATATTCCTATTTTAAAACTTTCCCACCCACTCTTTGCC
ACTGAAAGCCTCTGGCTGGTGTAGTCTTTGTAGGACCACCTCTGGCCACA
CCAGAACACTGGCCTTTACATAACTACAGCATGATCTCTCTTTCCAGCCC
TCCATCCACAGGGTTTCCCTCATGTACCATCCTAGGTAGACATCTTCCCA
GTGCAGTTCTAGGCAGGTAGAATGGTCACTAGAGTCTTTGTGTGATGCTG
TGGCAATGGTCAGTGCTTTCCNNACCAACCTCCTCACATGGTGAAGTCAG
TCTTCTTCCGCATTCCTTCTTGTCAGCCTCTTCAGATCTGGCTGATACCA
CGTTGGGTTTCTCCCTGGATGGGGTCAAGCTCGGCCAACAGTGAGAGCTC
TGCATTTGTGTAATTCAGTAAAATACACTTACTTTTTTCTGCTATCATGG
TGCATTCCGAGACAGATTATTCTCTCAGGCTCCTGGATACTGATAACAAT
TGTAATCTATCTTGTATGAGATTTATGCCGACTCTCTGAATCGAATCCTT
TACTTTTTTTATCCTATCTTCTATTATCGCCTTTTATCTCCAAACTCTGC
AATTGCCATGTGCTTTACCTATC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCCAAATTCTTTGGGAAGACAAAGAGTGAATCA
AGGTACAAGAGAGATTTCCATTATTATCCCAATTTATGCAAAAGGAAAAG
AAATGATAAAAGTTGAAATGTAAAATATAAAGCTGTGAGCATTTTTTAGA
AAGCAGTATGGCAGCCGGGCAGTGGTGGCATGTATATATATATTACAATT
ATATAGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGA
GTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA
CACAGAGAAACCCTGTCTTGATTTTATCAAAAAATACAAAAAAAAAGCAT
TATGGCTAAAAAATCAAACAAAACACCACACACCCCCACCTTTTATTTAG
ACAATCAAGCCAGAAAACTCAACATATAACTAATAGAAATTACAGAGGGA
TAACATACAATTATGTGATAGCAAAGTTCACAGTAGGACACAAGTTTCCT
TGTGAATGAAATGGATTTCCTATGTCACCTACAATTATGGATGAACATGG
GAAAAAATCACCAAGGAATATCACAGTAAAATTTCAGATAGATAAGTTTC
TAAAAGAAATTAAACAAATGAACAGCAGAAGCCACAGCAGGCAGTAAGCT
GAAGATAGACTAGGGAAGACAGAGTTCTTCAAAGACATGAAAACCAGAAC
CAGTGCTGTGCATCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_l13.b1 MSMg01no318_l13.b1 CHROMAT_FILE:
MSMg01no318_l13.b1 PHD_FILE: MSMg01no318_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:57 2005
         (334 letters)



>mm_chr2_126270671_126271404
          Length = 734

 Score =  389 bits (201), Expect = e-112
 Identities = 213/217 (98%)
 Strand = Plus / Minus

                                                                       
Query: 118 ccactctttgccactgaaagcctctggctggtgtagtctttgtaggaccacctctggcca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccactctttgccactgaaagcctctggctggtgtagtctttgtaggaccacctctggcca 475

                                                                       
Query: 178 caccagaacactggcctttacataactacagcatgatctctctttccagccctccatcca 237
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 474 caccagaacactggcctttacataactacagcgtgatctctctttctagccctccatcca 415

                                                                       
Query: 238 cagggtttccctcatgtaccatcctaggtagacatcttcccagtgcagttctaggcaggt 297
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caggggttccctcatgtaccaccctaggtagacatcttcccagtgcagttctaggcaggt 355

                                                
Query: 298 agaatggtcactagagtctttgtgtgatgctgtggca 334
           |||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaatggtcactagagtctttgtgtgatgctgtggca 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)