BAC Information

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BAC

Clone NameMSMg01-318N01
Chromosome2 (Build37)
Map Location 20,906,835 - 20,907,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433406, LOC654360, LOC667609, Etl4, Arhgap21, LOC433408
Downstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318N01.T7 (MSMg01no318_n01.b1)MSMg01-318N01.TJ (MSMg01no318_n01.g1)
ACCAG438509AG438510
length777788
length of high quality
(start - end)
210 (74 - 283)241 (131 - 371)
definitionCHROMAT_FILE: MSMg01no318_n01.b1 PHD_FILE: MSMg01no318_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:03 2005CHROMAT_FILE: MSMg01no318_n01.g1 PHD_FILE: MSMg01no318_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAACCGCGGAA
TTCTTGGCATAGTTGCTTCTGTTCATAAGCTGTTCAGGTAGGGGATGACT
CTCCTGGGACATGGAATGGAGTCCCTTGGTCTTCTCAGACCCTCTTTACG
ACAGTAACTTCTGGTGAACACAAACTGAATACTGAATGAAAAGACAAACT
TATTCCTGTCTATAAACCTCTTAAGGTTGTCAAAATGCGGACATTTTGCA
ATGGACAGGACTAGTCTTTAAAACAAATAGTAGGTTATAACAAACACATT
GATACAGATATTACTGTGCTACATAAAGAAGACTAAAACCAATGGCATGG
CTAATGGGGGCTGCTTCTAAAGACCAGAGCGGGGAGAAAATTATTTCAGT
GCGTCTGGACGATGCAGGGACCGCCCCCCGACACGGTAAGTGCCAAAGTC
AGAAGAACAAAAAACCGGTACCAGGCGGTTTAAACAAACATTGCAAAATT
ATGATGTTCATATGCGAGAACACTGAGTTAGCCCTCCTAGTCGTAAATTT
TTTCCTAATGCTTTCATCTTGATGTTCCTTTTTAAAAATATTATTTACTT
ATTATATGTAAGTATGCTGTAGCTGCCTTCATACACTCCATAAGAGATTA
TCCGATTTCTTTACTGATGTTTATGACCCACCCATGGTCTTTGCTGGGAA
ATGAATTCACGACTCTTCCGAATAATAATCTGTGTTCTTAAATGCTGATA
CATTTTATTAGTCCCTCGTTGTCTTTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCGAAATATGGGACCAAGCGAAGAGGGGAGATGCA
CCTGAAAAGTTGTGAGTAGATTCACCCTACCTGAGCAATGGCCAGCAAGT
GACAGAACACAGGTTAAAATACATGGGATATTTTAAGTTACATCTAGTTA
GAGTAGACCTGAGCTATATGGCTAAGATGTTTGTAAATGTATTTTGAGTC
TGGGTCTTATTTCTAGGAGCATGAGGCTGGGAGAAAAAACTGTACAAACT
TCTACACGGGTAGTATATGTCTTCAAGCCTGTCTGCCTTTATCCCTCGCT
ACAGTGCCCAGCATCCCATCTTTATATCTCACAAAATACCACTGGATTCA
GTTACCTATGTGGGTTGATCGCCCCCCTGTACTGAGGCAGAGATATATAA
ATGAACTGAGACCATGTACGATACTGACTAAAGTCACAGATGCTCAGTAA
CATTGTACAAATTAGATGTATGACACTAATAGAGGATTTTAAGACATCAA
ATGATATCCAAGTGTATCTCTTGGCCCCTTGTATGACCGTGGAATCTGTC
TTTTGCTTGAAGTGTGACATATTGGAAGGGTGGAGGTCTTTTCCCGCTTT
CCACGGTGTTGCCCCTTTTTACTTCTCTGCTACATTTTGTTCCCTGTCCT
TTTCAGGGCTTCTAGCTTGCTCATTAACGTATACAATCTTTTTAATCTTA
TTTCTCTCTCTCTNTCTTGCCCTTGATAATATAAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_n01.b1 MSMg01no318_n01.b1 CHROMAT_FILE:
MSMg01no318_n01.b1 PHD_FILE: MSMg01no318_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:03 2005
         (210 letters)



>mm_chr2_20906635_20907244
          Length = 610

 Score =  398 bits (206), Expect = e-116
 Identities = 209/210 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataagctgttcaggtaggggatgactctcctgggacatggaatggagtcccttggtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cataagctgttcaggtaggggatgactctcctgggacatggaatggagtcctttggtctt 260

                                                                       
Query: 61  ctcagaccctctttacgacagtaacttctggtgaacacaaactgaatactgaatgaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagaccctctttacgacagtaacttctggtgaacacaaactgaatactgaatgaaaag 320

                                                                       
Query: 121 acaaacttattcctgtctataaacctcttaaggttgtcaaaatgcggacattttgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaacttattcctgtctataaacctcttaaggttgtcaaaatgcggacattttgcaatg 380

                                         
Query: 181 gacaggactagtctttaaaacaaatagtag 210
           ||||||||||||||||||||||||||||||
Sbjct: 381 gacaggactagtctttaaaacaaatagtag 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)