BAC Information

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BAC

Clone NameMSMg01-319H06
Chromosome2 (Build37)
Map Location 111,030,848 - 111,031,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301
Downstream gene4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319H06.T7 (MSMg01no319_h06.b1)MSMg01-319H06.TJ (MSMg01no319_h06.g1)
ACCAG438974AG438975
length732741
length of high quality
(start - end)
386 (27 - 412)343 (68 - 410)
definitionCHROMAT_FILE: MSMg01no319_h06.b1 PHD_FILE: MSMg01no319_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:48 2005CHROMAT_FILE: MSMg01no319_h06.g1 PHD_FILE: MSMg01no319_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTA
AATATTTACCCAAGAGTAATTCTGAATAACTAACTGTTTTGTTTTTTTAA
AGTAGCCTTTTAAATATCCATTGCCATAAAATTTCACTACAAATTGGTAA
AAGTCAACACTTAACACAAAAATAGGATCTAGTAGCAGAAATTGCTTGAG
ACAAAATAAACAAAATTGATATGGTGTTAAGAATTCATATTGTGTTATCT
GGAGAAAGACCACAAGTAAAAGCTCTTCCATATAGGCAAACAAAGTTTTT
AAAACCTTAAAAGGCAGGAGAGTAGTTTCAGTAACTAAGACCCCTTCCTG
CCTTTTCAGAAGACTCTAGGTCAGTTCCCAGTACACATATCAGGTAGCTT
ATAACCAAATGCCACCACCCCCTCTAGAGGATCCAAAACACATCTGCCTT
TCCAGGCTCTGCACAAAGACACATCTAAACAAGATCTATGTACATGAAAA
GGCCTACTAGTTTTAAAAAGATGTTTAAATAAATGGAGAGAGAGAACATT
TTATTTTAATAAATGGGATGAAAATACTTGATATGATATGCAACAACTTT
TTTGTAATGAAGAAAGTACTACAAAAGAGACTAGCAATGTTTAGTAGAAG
AGAAGATGCATTTCTTTATTGTCTCTCTGAACTATGCCAGACATTTATAG
GTATATTTTCTTGCCAATAATATGAGAACAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGAGAATTCTCAACTGAGAAATCTTAAGCAA
CAAAGAAGCACTAAAAGAAAAGTTCAACATCCTTAACTATTAAGAAAATC
CAAATCAAAACTACTCTGAGAATCCATCTTACAGCTGTCAGAATAGCTGA
CCATTGTTGGAACCCGCTATGCAAATATGCTATTGTTAGGGGTTCTTAGA
AACTGTCTTGAGAAAAAACTTGCACAATTAACAGGTATTTCTTGTGACTC
TTGTTACTTTGCACTTCCTTGTGACTCTTAACTAGTATTTTTGGTATTTT
CTAACAATGACCTTCCCACCCCCTTGAGTTGTAGTTTCTTCCTTTAAATA
CACTCTTACCCCCCCCCCCGGGGAGACACGGTCCTCTACCACTGTGTGGT
GTATGACTGTGGGCCCAAGGGTGCTCTTGAATTAAAAAGTCCTCTTGCAG
TTTGCAATAAGGCTGTTTCTCATGAGTGATTTGGGGGTGTTGTCTTTCCT
GAGTCAGAACATGGGGGAGTCCTCATGTTGTGTGTCTTTCAGAAGGAAGG
AAAAAGGAAGGGAAGGAGGGAGGGAAGGTAGTNACTCATTTTCCCTTTTC
TCTTACTTCTTTCTTTCTTTTCTCTACTATCTTTTTTTTTCCTCATTATG
TTTATTTTTTTTCTCTCCTCTTCTCATAACCCCGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_h06.b1 MSMg01no319_h06.b1 CHROMAT_FILE:
MSMg01no319_h06.b1 PHD_FILE: MSMg01no319_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:48 2005
         (386 letters)



>mm_chr2_111030632_111031418
          Length = 787

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/370 (98%), Gaps = 1/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctaaatatttacccaagagtaattctgaataactaactgttttg-tttttttaaa 75
           ||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 217 gaattctaaatatttaagtaagagtaattctgaataactaactgttttgttttttttaaa 276

                                                                       
Query: 76  gtagccttttaaatatccattgccataaaatttcactacaaattggtaaaagtcaacact 135
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtagccttttaaatatacattgccataaaatttcactacaaattggtaaaagtcaacact 336

                                                                       
Query: 136 taacacaaaaataggatctagtagcagaaattgcttgagacaaaataaacaaaattgata 195
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taacacaaagataggatctagtagcagaaattgcttgagacaaaataaacaaaattgata 396

                                                                       
Query: 196 tggtgttaagaattcatattgtgttatctggagaaagaccacaagtaaaagctcttccat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tggtgttaagaattcatattgtgttatctggagaaagaccacaagtaaaagctcttccat 456

                                                                       
Query: 256 ataggcaaacaaagtttttaaaaccttaaaaggcaggagagtagtttcagtaactaagac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ataggcaaacaaagtttttaaaaccttaaaaggcaggagagtagtttcagtaactaagac 516

                                                                       
Query: 316 cccttcctgccttttcagaagactctaggtcagttcccagtacacatatcaggtagctta 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cccttcctgccttttcagaagactctaggtcagttcccagtacacatatcaggtagctta 576

                     
Query: 376 taaccaaatg 385
           ||||||||||
Sbjct: 577 taaccaaatg 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space:   293306
Effective search space used:   293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)