BAC Information

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BAC

Clone NameMSMg01-319P06
Chromosome2 (Build37)
Map Location 80,153,771 - 80,154,120
singlet/doubletsinglet
Overlap genenone
Upstream geneItga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1
Downstream geneDnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319P06.T7 (MSMg01no319_p06.b1)MSMg01-319P06.TJ (MSMg01no319_p06.g1)
ACCAG439323AG439324
length731730
length of high quality
(start - end)		372 (38 - 409)344 (67 - 410)
definitionCHROMAT_FILE: MSMg01no319_p06.b1 PHD_FILE: MSMg01no319_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:22 2005CHROMAT_FILE: MSMg01no319_p06.g1 PHD_FILE: MSMg01no319_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
GTTATTCACACAAATATAAAAATCGAAGCTATTATCCACACATGAGGACA
AATGCACCGCATTTGACTTTCTGGGCTGGTTTTACCTCACTTGGTATAGT
ATTTTCCATCCAATTGAAGATTTTCACTTTTCTTTACAGCACACTAGAAT
CCTATTGTGTATTTGCATCATGTTTTCATTATTCCTTTATCAGTAGGTAG
ACATTTAGGGTGATTTCAGTTCCTAACCATTGAGAGTAGAGCAGCAATGG
ACATAGATATGGAAGTATCTCTATAGGGGATATAGAATCCTTTGGACAAT
ATAGCTGGTTTATGTGGTATTTCTATATTTAGTTTCTTTGTGGAACCTCT
GAGACTGACGCCCACACCGGTCTTACTACTTTGTACTACCAACACTGGAT
AAGGGTTCCTCTCTCTCATGTCCACACTAGCATCAGCTCTATCTATGCTT
GACAATAACCATTCTGAAGAGGTTGAGATGGAATCTCCAAGTAGTTTTCA
TTTCCCTGGAGGCTAACAATGTTGAACACTTTTTAAAAGTGTTTATGGAT
CGTTCATATTTCTTCTTTTGAGGACCCTGTTCAGAAAGAGCCCATGAACC
AGCCACTTTCAGCATGCCCATTGCTAAGTAACTTCAAGGAAAGTGGTTGA
AAATTTGTAAAAATTATATCTTACCAGAAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATACAAGTTTAAGACCTTGAAATCTGGGAAAAC
TGGATAAACATTTCTCATTAAGGAAGTCTAAAACACGATTGTGCTAAACA
GAAAAAAGAAAAATAGCTCCTTACTAGATCCTTATACTGGGAAGTCTTAC
TGATAATTGGAAAAACCGGAATCTGACATTTGTGGACTAGACACTGATAA
TGTGTTGATAGAAACTACCCATTTTCGAAGGTTGAACTTTTAAAAGAAAG
CATCCCATCTGTGAAAAAAACACATACTAGTTTTGGGGGGGGGTCATGGG
AGAAGTCAACTTACTCCCAAACTTTTGAGAAAAACAATTTTTTTGTACTG
CAACATTTACCCCCCCGCAACTTTAAGATCATTTCAAATTAAGCAAAGTC
ATCCTTACATAAAACATTTCATCACTTAAAACTCTTCTTCAGCTTCCTAT
TGAAAAGGGGGAGGACTTTTTTTTAAAGATTTGTTTATTTTTATGCACAT
TGGTGTTCTGCCTACATGTCTGTGCAAGAGTGCCAGAGCCTCTGGAACTG
GTGTTACAGATAGTTGTGGGCTGCCATGTGGGTGTTGGGAATTGAACTCT
GTCTTCTGGAAGAGCAGCCAGTAATCTTAACCACTGAGCCGTAAAACCTC
TTAAAAAGAGCTGAAAGCTGCTGGATGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_p06.g1 MSMg01no319_p06.g1 CHROMAT_FILE:
MSMg01no319_p06.g1 PHD_FILE: MSMg01no319_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:22 2005
         (344 letters)



>mm_chr2_80153571_80154321
          Length = 751

 Score =  580 bits (300), Expect = e-170
 Identities = 335/350 (95%), Gaps = 7/350 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacaagtttaagaccttgaaatctgggaaaactggataaacatttctcattaaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacaagtttaagaccttgaaatctgggaaaactggataaacatttctcattaaggaag 260

                                                                       
Query: 61  tctaaaacacgattgtgctaaacagaaaaaa-gaaaaatagctccttactagatccttat 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 261 tctaaaacacgattgtgctaaacagaaaaaaagaaaaatagctccttactagatcctcat 320

                                                                       
Query: 120 actgggaagtcttactgataattggaaaaaccggaatctgacatttgtggactagacact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgggaagtcttactgataattggaaaaaccggaatctgacatttgtggactagacact 380

                                                                       
Query: 180 gataatgtgttgatagaaactacccattttcgaaggttgaacttttaaaagaaagcatcc 239
           ||||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 381 gataatgtgttcacagaaacttcccatattcgaaggttgtacttttaaaagaaagcatcc 440

                                                                       
Query: 240 catctgtgaaaaaaacacatactagttttgggggg------gggtcatgggagaagtcaa 293
           ||||||||||||||||||| |||||||||||||||      |||||||||||||||||||
Sbjct: 441 catctgtgaaaaaaacacacactagttttggggggtggggggggtcatgggagaagtcaa 500

                                                             
Query: 294 cttactcccaaacttttgagaaaaacaatttttttgtactgcaacattta 343
           |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 cttactcccaaacttttgagaaaaacaatttttttgtactacaacattta 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 751
Length adjustment: 9
Effective length of query: 335
Effective length of database: 742
Effective search space:   248570
Effective search space used:   248570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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