BAC Information

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BAC

Clone NameMSMg01-320B13
Chromosome2 (Build37)
Map Location 14,553,299 - 14,553,580
singlet/doubletsinglet
Overlap geneCacnb2
Upstream geneSt8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164
Downstream geneLOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320B13.T7 (MSMg01no320_b13.b1)MSMg01-320B13.TJ (MSMg01no320_b13.g1)
ACCAG439425AG439426
length725724
length of high quality
(start - end)
330 (46 - 375)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no320_b13.b1 PHD_FILE: MSMg01no320_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005CHROMAT_FILE: MSMg01no320_b13.g1 PHD_FILE: MSMg01no320_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGAACTTCAAAGAAGACCTAATACCAATACTCTTCAAACTA
TCTCACAAAATAGAAACAGAACGAACACTACCCAATTCATTCTATGAAGC
CACAGTTATGCTGTATATTCTCCTTTGGAGATGCAATGATTTCTGTCTAA
TCAGGAACCTGTCACAATTTACTTTCATAGAGGACTTTATGAGTTTTTTT
TCTACTTCTATCATGTTTAATGTTCCAAATAGATTTTAAACATTGGTTGA
GTGCATATTACTTTTAGCTTCAGAAGATACCATGAATATTTAAGAGGCAT
TTAGCCATTATTTTTTATTTTGATGCACTTCCCAAATGTCAATACTGAGT
TGTATATTTTAAAATAAATTTTATTAGTTTAATAATAACACAGAATATGC
TTAGTTTTGTAAGAGAGTGGCTGCACCATTGTGCATCCCCACCATCAGTG
AATGAGCTTTCTTCTTGCCCCAGCATTTGGAGTTATTCTCCTGACTTAAC
CATTCTGACAGGTAATTAGTAGCAACAAGAAAGACTTGGACAAATGGCAG
CTATCACATCTTGAAATACTATAAGCCAAATAAACGCCTTTATCCTTATA
AATAATTCACTTCATATTATCTGATTAGTGACAGAAAATGGACCAAGAAT
TTCATCTAAAAGGTGCTCCATGTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTCCCTACACCAGAAGCTTAACA
ACTGCTACTATGAGTATTGGTTCTAATTCTGTCTGGTTTCTGAGTTCCCA
AGAAAAGTGTAACTTCCTCTTCTCTCTGTATCTTTTCTAGTGTGTTTTCT
CAACAATTGGGGCTCCCCCTAACACTCTGGGCTTCCTTCCTCTTTCTCTG
AGGCCTCCCTCCCTGCCCTGTGGTTGCTTGTTCACCAACCTTATGCCAGC
TTAACCTAGCATGGGTCTTTCCTTCTCTTCTCCAGCCACTTCCTCAGGCA
GCTGCTATATTTTTACAGCACGCCCGCCCTGAGGTTTTTCTCTTAACTGC
TAATAAAATTGTGGTTGAGCTTCAAACTTAACCTGTTCTTATGTCCATTT
ACTAATGATACTAAAAGCCCTGAAGGAGGCCCTGATTTTCCCTGTATCAA
TCTAAGTAAAAAGGCCATTCTTTTTCTGAACTGTACATATACATACATAC
ATACATACATATATATACATATATGTATATATATATATATATTCATTTTA
TAATCATAAAGAAAATTATAGATCTAAACATAAAACCGATAGCTTGATGT
AGTAATGCCAGCCTTTTATCCCAGCATTTGGGAGTCCGAGTCAGGTAGAT
CTCTGCAAATTCAAGGCTAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_b13.g1 MSMg01no320_b13.g1 CHROMAT_FILE:
MSMg01no320_b13.g1 PHD_FILE: MSMg01no320_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:32 2005
         (283 letters)



>mm_chr2_14553099_14553781
          Length = 683

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtccctacaccagaagcttaacaactgctactatgagtattggttctaattctgtctg 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 482 ctgtccctacaccagacgcttaacaactgctactatgagtattggttctacttctgtctg 423

                                                                       
Query: 61  gtttctgagttcccaagaaaagtgtaacttcctcttctctctgtatcttttctagtgtgt 120
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtttctgagttcccaagaaaagcctaacttcctcttctctctgtatcttttctagtgtgt 363

                                                                       
Query: 121 tttctcaacaattggggctccccctaacactctgggcttccttcctctttctctgaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttctcaacaattggggctccccctaacactctgggcttccttcctctttctctgaggcc 303

                                                                       
Query: 181 tccctccctgccctgtggttgcttgttcaccaaccttatgccagcttaacctagcatggg 240
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 302 cccctccctgccctgtggttgcttgttcaccagccttatgccagcttaacctagcatggg 243

                                                     
Query: 241 tctttccttctcttctccagccacttcctcaggcagctgcta 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tctttccttctcttctccagccacttcctcaggcagctgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)