BAC Information

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BAC

Clone NameMSMg01-320F24
Chromosome2 (Build37)
Map Location 59,232,236 - 59,232,457
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320F24.T7 (MSMg01no320_f24.b1)MSMg01-320F24.TJ (MSMg01no320_f24.g1)
ACCAG439626AG439627
length706799
length of high quality
(start - end)
---221 (192 - 412)
definitionCHROMAT_FILE: MSMg01no320_f24.b1 PHD_FILE: MSMg01no320_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:52 2005CHROMAT_FILE: MSMg01no320_f24.g1 PHD_FILE: MSMg01no320_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCAAAATTGCGGCGCTAAAGANTCCTTTCCAAGAGGGGGGNGGANNGN
NAATACCCAAAAAAGNGGNNNANNNGGAAANANGNANNAGGGAGGGGNNG
GNTTTATTTAACANACAGAAAAGGGGANNGNGGANNNGGAGNNNNNNNNA
NNNNNNNNGGGGGAAGGGAANGGGAGAANGNANAGGGAAGAAGAAGAGAA
AGGGGNNAAAGAAGGAGAGAGGANAGAAGGNGAGNNNAGTGTTTGNATAG
GTATATAAATATTGTGTGTAAGGAGTAATTGAGGGGAGAGAANAGGAAGA
GAATTTTTTTTTTTGAAAAAGGGGGGAAAAGAGAGGGGGGGGGTTTTTGT
ATTTTCCCCCCCCCCCCCCCNGGNGGAGNGGNNGGAGGGGNGGGGNNNGG
NNAGAAAAAGNGAAAGAAAAAAGGGGGGGGGGGANGGGANNGNNNANANA
GGGAAGAGGGAGGAAGAGAGGAAGAAAGAAAAGGGAAGGGAGAAAGAAAA
GAAGGGAGAAGAAGAANAAGAAAGGAGGGAGAAGGAAGAAGAGGAGGAGA
GAAAAAAGGGAAGGGGAGGGGAAAGGAGAGAGGGGAAGAAGAGGAAAAGA
GGGAGAGAAGGGAGGAAAAAAAGGGGAGGGATTTTTTTTTGTTTTAAGGG
TGTTTTATGTTGTTTAATTGATTTTTTTATTATGTTGTTTTTTTATATTT
AGGATG
NTTTTTCCTTTTTTTTTTTTTTTCCTCCGCCTTTCCCCCCTTAANNNTTC
CCTCCACTAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCCCGAGGAATTCCACTTGGATTTATGTATC
ATTTTCAATGTATCTATCTCNTTGCAACAAAAAAAAGAAGTTACTGTAGG
CATTTCATTATGGCTATTGGTGTCATTTCAGCAGTGTGCATCAAGTTTAG
AAACACCATACCCACTTACATTTCTTTACAACTACACCTTATAAAACATC
ACTGCCTTAAATAATGTTTCATATATACATATACACACATATATATATAT
ATTCATATCAAACAGGTATGGTTTTTACTTTAAACATCAAACATAGTTTG
GAAAACTATGATTTGAGTAATTGCCCCCCCCCGNCCCCATATTCTTTCCA
CTTAATATTCCAAAATTTCTTTTCAAAAAAAAACAAGAAACCGGGCAGGG
GTGGGACACGCCTTTAATCCCAGCATTTGAGAGGCAGAGGCAGGTGGATT
TCTAAGTTCAAGGCTAGTCTGGTCTACAAAGTGAGTTCCACGACAGTCAG
GGCTACTCAGAGAAACCCTGCCCCATAAAAACTAAAACCACAACTAAAGA
TGAAGAAGAAGAAGAGGAATAAGAATAAGACTAAGATGAAGATGAACAAC
ATGACGCACATATTTTAATTAAGTATAGTAAGTAGGAAGATTTTATAGGT
ATGCGGTATATATTTTTATGTTGCATACACTTAAAAGTGTAGTCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_f24.g1 MSMg01no320_f24.g1 CHROMAT_FILE:
MSMg01no320_f24.g1 PHD_FILE: MSMg01no320_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:52 2005
         (221 letters)



>mm_chr2_59232036_59232656
          Length = 621

 Score =  364 bits (188), Expect = e-105
 Identities = 213/222 (95%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtaggcatttcattatggctattggtgtcatttcagcagtgtgcatcaagtttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgtaggcatttcattatggctattggtgtcatttcagcagtgtgcatcaagtttaga 260

                                                                       
Query: 61  aacaccatacccacttacatttctttacaactacaccttataaaacatcactgccttaaa 120
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aacaccatacccccttacatttctttacaactacaccttataaaatatcactgccttaaa 320

                                                                       
Query: 121 taatgtttcatatatacatatacacacatatatatatatat--tcatatcaaacaggtat 178
           |||||||||||||||| ||||| | | ||||||||||||||  |||||||||||||||||
Sbjct: 321 taatgtttcatatatatatatatatatatatatatatatatattcatatcaaacaggtat 380

                                                     
Query: 179 ggtttttactttaaacatcaaacatagtttggaaaactatga 220
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ggtttttactttaaacatcaaacatagtttagaaaactatga 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)