This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-320J04
Chromosome
2 (Build37)
Map Location
44,061,973 - 44,221,680
singlet/doublet
doublet
Overlap gene
Arhgap15
Upstream gene
LOC100041245
,
Kynu
Downstream gene
Gtdc1
,
Zeb2
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100041245
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 2270 ESTs, 22 Proteins
name
Kynu
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70789
MGI:1918039
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Arhgap15
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76117
MGI:1923367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Gtdc1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:227835
MGI:2444269
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Zeb2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:24136
MGI:1344407
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041245
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149249271
GeneID:100041245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 2270 ESTs, 22 Proteins
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
transcript_id
: XM_001476037.1
name
Kynu
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:27229112
GeneID:70789
MGI:1918039
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: kynureninase (L-kynurenine hydrolase)
transcript_id
: NM_027552.1
name
Arhgap15
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:90962990
GeneID:76117
MGI:1923367
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 15
transcript_id
: NM_153820.3
name
Arhgap15
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:70780376
GeneID:76117
MGI:1923367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 15
transcript_id
: NM_001025377.1
name
Gtdc1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142356062
GeneID:227835
MGI:2444269
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glycosyltransferase-like domain containing 1
transcript_id
: NM_172662.2
name
Zeb2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:125490363
GeneID:24136
MGI:1344407
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: zinc finger E-box binding homeobox 2
transcript_id
: NM_015753.3
name
LOC100041245
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149249272
GeneID:100041245
definition
codon_start
: 1
product
: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
protein_id
: XP_001476087.1
name
Kynu
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27229113
CCDS:CCDS16018.1
GeneID:70789
MGI:1918039
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]
GO_function
: GO:0030429 - kynureninase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]; GO:0009435 - NAD biosynthesis [Evidence IEA]; GO:0019363 - pyridine nucleotide biosynthesis [Evidence IEA]; GO:0006569 - tryptophan catabolism [Evidence IEA]
codon_start
: 1
product
: kynureninase (L-kynurenine hydrolase)
protein_id
: NP_081828.1
name
Arhgap15
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70780375
CCDS:CCDS16019.1
GeneID:76117
MGI:1923367
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030675 - Rac GTPase activator activity [Evidence ISS]
GO_process
: GO:0008360 - regulation of cell shape [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: Rho GTPase activating protein 15 isoform 1
protein_id
: NP_722542.2
name
Arhgap15
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:70780377
GeneID:76117
MGI:1923367
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030675 - Rac GTPase activator activity [Evidence ISS]
GO_process
: GO:0008360 - regulation of cell shape [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: Rho GTPase activating protein 15 isoform 2
protein_id
: NP_001020548.1
name
Gtdc1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27369952
GeneID:227835
MGI:2444269
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]; GO:0009058 - biosynthesis [Evidence IEA]; GO:0006952 - defense response [Evidence IEA]
codon_start
: 1
product
: glycosyltransferase-like domain containing 1
protein_id
: NP_766250.1
name
Zeb2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:40254564
CCDS:CCDS16020.1
GeneID:24136
MGI:1344407
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IC]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0019208 - phosphatase regulator activity [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence NAS]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007417 - central nervous system development [Evidence IGI]; GO:0048598 - embryonic morphogenesis [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IC]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001756 - somitogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; zinc finger homeobox 1b
product
: zinc finger homeobox 1b isoform 2
protein_id
: NP_056568.2
clone name
MSMg01-390J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-195F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481N18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-459C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451E05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-197L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274P08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141H22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-518M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-071D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330E14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-165O18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-082E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-461D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-497B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498P08
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-409J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146E04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-165L15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490P10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-372C16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-311N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170K14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-126M12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-220M12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-214M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-331D09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-041J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165M16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-108H14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130H05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146L03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288B03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-309G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-317A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-290H11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032I22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093E07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142K01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182E12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-325L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-176A22
singlet/doublet
singlet
plural/unique
unique
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