BAC Information

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BAC

Clone NameMSMg01-321N20
Chromosome2 (Build37)
Map Location 92,752,111 - 92,752,323
singlet/doubletsinglet
Overlap genenone
Upstream geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
Downstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N20.T7 (MSMg01no321_n20.b1)MSMg01-321N20.TJ (MSMg01no321_n20.g1)
ACCAG440720AG440721
length739726
length of high quality
(start - end)
44 (73 - 116)213 (147 - 359)
definitionCHROMAT_FILE: MSMg01no321_n20.b1 PHD_FILE: MSMg01no321_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:42 2005CHROMAT_FILE: MSMg01no321_n20.g1 PHD_FILE: MSMg01no321_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANGAGTCCGCGGAAT
TCTGGTCTATTTCGGAGAATAAAAGAAAGACACCATCTCAAAAAATAATT
CAAGAGTCAACAATGAATATGCCGAGAGAGGAAGAGGAGGAGTGGGATCT
CAGGTAATTTGGAACTGGAGAGTGTTCGGGAAGGAGGACATTTGAATTCC
CAGCTAACGTCTGTGTGAAGTGAATCTGTGACTCCTTAAACAATGGTAAT
GATAACAAGTAGAAACTTCTAGAGTTGGGTTTGAGGTGACAGGTATTGTG
GTTAGATTGCACCTCCTTTTTTTTTGCAAGGGCCCAGAGAACACCACACC
ACACAAGGATTGGTTAGATTTCCCCCCCGCGACCCCCCTGAAGGTTAGTG
ATTATTATTTTGTGGACCCCCCCCCCCTAAAAAAATAAAAAAAGGGGGGG
GTGGTGGGTCTCGTATTTGATACTTATCTTTTGTAATATGCCTCTCTCTG
CCGCTGTTCCTGATTATGCTTTTTTCAGCGGAGCATTGATTTGACCCCAT
TCGCGTATGGCCTTAGTATTGCGTATATTTTTTTTTCTTTATTCTTCGGA
TTTTATGTGTTTTGATTTTTCGCTATTAGTGCTCGTTTGTTATATCTGTT
TGTTTTTTTTATCTGGATGACTCCTCATTTTCTTCTTTTCCCTTTATTTA
TTATATTATATTAATTCCCCATGTATCTTTTTATATTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAG
AAGCTACCCCATGGTGTATTTGAATTTTTTTTTTCTCCAGGATGAAAGCC
TTTCTGGATCTTAGAGACTGGGAGTGACTCTTCCTTATTAGACTAGAGTG
ACTATTTAAACATCCACACATATATCAAGATAACAATGAAGGCATTTCAT
CCAGAGGTTGGGGAGCAGCCCATAGAGAGCCTTCTTCTGCTTAAAATGCC
TGCCCCCCCTTTTTATCTTGCTCTTGTCTGACCTTGGAAGCCTGGCAGCC
AGAATATTCCCAATTACCCACCAGCCTCATCACTGTCTCATCCATTCTTC
CAGGATGACTCTGTCAACCACTTTTATCAGACCACATGATTTCATTTGTC
AAAGAAATCCAGCCATGCCTTTTCATTAAAGACCATTTCTCAGATATCAG
TCACAGGAAGTGTAAGTTATCCCTTTGATGGTGTGTGTGAGGCCTGTCTG
GTTGGCTAGCAAAGGCATCCCAGCATCCTGACAACCCCTGGGGTTCATCT
GTCTTGGGCTCCACTCTTGGCTCTCTAATAGGTTCATTGCATATGAAAGA
GATGAGAAGCAAACTCTTCTTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n20.g1 MSMg01no321_n20.g1 CHROMAT_FILE:
MSMg01no321_n20.g1 PHD_FILE: MSMg01no321_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:42 2005
         (213 letters)



>mm_chr2_92751911_92752523
          Length = 613

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaagctaccccatggtgtatttgaattttttttttctccaggatgaaagcctttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaagctaccccatggtgtatttgaattttttttttctccaggatgaaagcctttctg 260

                                                                       
Query: 61  gatcttagagactgggagtgactcttccttattagactagagtgactatttaaacatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcttagagactgggagtgactcttccttattagactagagtgactatttaaacatcca 320

                                                                       
Query: 121 cacatatatcaagataacaatgaaggcatttcatccagaggttggggagcagcccataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatatatcaagataacaatgaaggcatttcatccagaggttggggagcagcccataga 380

                                            
Query: 181 gagccttcttctgcttaaaatgcctgccccccc 213
           |||||||||||||||||||||||||||||||||
Sbjct: 381 gagccttcttctgcttaaaatgcctgccccccc 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)