Query= MSMg01no322_a02.b1 MSMg01no322_a02.b1 CHROMAT_FILE:
MSMg01no322_a02.b1 PHD_FILE: MSMg01no322_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:52 2005
(327 letters)
>mm_chr2_142111220_142111946
Length = 727
Score = 578 bits (299), Expect = e-169
Identities = 317/323 (98%)
Strand = Plus / Plus
Query: 4 ggaattctaccattgcgatgtctccaacctccagtatttaatacactttctcagttcact 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaccactgggatgtctccaacctccagtatttaatacactttctcagttcact 263
Query: 64 tggaaaatatcctcatccttcttatgcctctatatccccatttcctataactctaagtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 tggaaaatatcctcatccttcttatgcctctatatccccatttcctataactctaggtat 323
Query: 124 cacatgattgcttgctacaaccagactcatacttgaaaattaaaatgtagtgaatttgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacatgattgcttgctacaaccagactcatacttgaaaattaaaatgtagtgaatttgtt 383
Query: 184 gtattctatacgaccaacctgttctaccctttaactttctgtcagttttggtctgataca 243
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gtattctatatgaccaacctgttctaccctttaactttctgtcagttttggtctgacaca 443
Query: 244 agtttccctaatgttgtatattgtgaaataagtataaaagtagaattttaaaagatggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttccctaatgttgtatattgtgaaataagtataaaagtagaattttaaaagatggat 503
Query: 304 ctaaaagaatgccagacttttta 326
|||||||||||||| ||||||||
Sbjct: 504 ctaaaagaatgccaaacttttta 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_a02.g1 MSMg01no322_a02.g1 CHROMAT_FILE:
MSMg01no322_a02.g1 PHD_FILE: MSMg01no322_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:52 2005
(554 letters)
>mm_chr2_142280075_142281029
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 548/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 1 attaagtcttgagaaacctaaaactaaacctgagacttcaattggcggaaaatatcccca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 921 attaagtcttgagaaacctaaaactaaacctgagacttcaattgggggaaaatatcccca 862
Query: 61 gagacctgtgagttgaagaatagatatgaatgctggctccagctttattaaatttcagtc 120
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 861 gagacccgtgagttgaagaatagatgtgaatgctggctccagctttattaaatttcagtc 802
Query: 121 cttaggcaaactttttgacctctctgaccctcagtattttcttgtcctcagtggagcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttaggcaaactttttgacctctctgaccctcagtattttcttgtcctcagtggagcaac 742
Query: 181 atttgctgaccatttctgatgaactca-ttttttttctttttttgcaaggttctaaggaa 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 atttgctgaccatttctgatgaactcatttttttttctttttttgcaaggttctaaggaa 682
Query: 240 tgtaaaactattgttataataagatctggtttcagccttaaggattcctctggcatggct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtaaaactattgttataataagatctggtttcagccttaaggattcctctggcatggct 622
Query: 300 ggaaaactaatggggagtgaccaaatatgaagtctcaggacccacataactatgtggatg 359
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 621 ggaaaactaatggggagtgaccaaatatgaagtctcaggaggcagataactatgtggatg 562
Query: 360 gggtgatgactgaaagggaagacagagacagggagggttcataaatgggagacttcagct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgatgactgaaagggaagacagagacagggagggttcataaatgggagacttcagct 502
Query: 420 cagagtcaaaggtgaaaggggaattaggcacaaactaggtcagaaaaggcacatttccaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagtcaaaggtgaaaggggaattaggcacaaactaggtcagaaaaggcacatttccaa 442
Query: 480 acaagaggagggggaacagtgtgaacactagctggaatggcagggtatatttggggtaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagaggagggggaacagtgtgaacactagctggaatggcagggtatatttggggtaat 382
Query: 540 ctgaaaagactggcc 554
|||||||||||||||
Sbjct: 381 ctgaaaagactggcc 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
