BAC Information

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BAC

Clone NameMSMg01-322C02
Chromosome2 (Build37)
Map Location 73,612,191 - 73,762,931
singlet/doubletdoublet
Overlap geneAtf2, Atp5g3
Upstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneLOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322C02.T7 (MSMg01no322_c02.b1)MSMg01-322C02.TJ (MSMg01no322_c02.g1)
ACCAG440910AG440911
length717714
length of high quality
(start - end)
366 (45 - 410)642 (73 - 714)
definitionCHROMAT_FILE: MSMg01no322_c02.b1 PHD_FILE: MSMg01no322_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:01 2005CHROMAT_FILE: MSMg01no322_c02.g1 PHD_FILE: MSMg01no322_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,612,191 - 73,612,536)(73,762,600 - 73,762,931)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTGTTTGCATTTACAACAAAAAGCATTTATGGTATGTGACAACA
TAACTGTGCCTGGTCAGATGACATAATTAAAACGTAACTGGAAACTGGAT
ATGCCGAATAACTTGTGAGAAATGTGCTTGGATATTAATAATAGGTTATT
CCTAATACATCATTGCACCTTCCTACTTTGAAAAACTGAATTCTTTGCAA
ATCTAAGTTTTGACATACTGAGTTCTCTTGAAATGATGTACCAAGGTCTG
TTTTTTGTAAAAGAAAAAGAAATGTCCCTTTTCAGTGCTTTTCCCCCAAC
CCACTGTCATTGTAAACTGTCTTACCCATTGAAACAATAGTGTTAAGTAA
CTACATCCACAAAATACCACTTCCCAAACAATACAGTTACCTTACAGTAA
CCAACTTTCTTCTGCCCTCTTTCCTCAGAGCACACATTTTAACCAATAAC
AAATTAGGTTCACATATTATTCTTGTTTCCAATGCAATGTACCAAGTTCC
CCCAAAATGCCCAACAATCCAACAGTAAGCAACACACGGACGGTGCAATT
CTATAGAAGCTATGGATGCTCTCGCATCTTATTCTTAATAATAATAATAA
TAATAATAATAAACTTTCCAGGATCTTTATTTACCGACTTACGCAATACT
TGTTCGCCAACCCTACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCTGAATTTGCTACAGTACTCTGGT
TATATAGATAGTCTTCTGGCCCTTAAGAAACATATACAGAAATGTCAGCG
GGTATAATGCTTGCTTTTATATGGATTTGAGAAATAATGAAATATGAGAG
AACTGGGCTGGAGCAGTGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCC
ATAGGACCCAGGTTCAATTCCCAGCACCCACATGGCAGCTTACAACTGTT
TCTAATTTCTGTTCCAGGTGATCCAACACCGTCACACAGACATACATGCA
GGTAAAACAATGTACATCAAAGATTAAAATAAAGAAAATGTTTAAAATAT
GAATCTTTCTTTTACAACTTATTTATTTAATTTTTTAAATTTACTTTACT
TCCTGATCACAGCCCCTCCTCTCTTTCCAGTCCCACCCTTACAAATCCCT
TACTCCACTGCTCCCTCCCCTCCCCCTCAGAGAAGGGGAAGCCCCACTTG
GGTATCACCCCACCCTGGGACATCCAATCCCAGCAGGTCTAGGCACATCC
TCTCCCACTGAGGCCCAACCAGGCAGTCCAGGTAGGGGGAAGGGGACCCA
ATGGCAGGGAACAGAGACAGAGACAGCATATTTGCTACAAATGTGTAAGA
GGTCTAGGTCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_c02.b1 MSMg01no322_c02.b1 CHROMAT_FILE:
MSMg01no322_c02.b1 PHD_FILE: MSMg01no322_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:01 2005
         (366 letters)



>mm_chr2_73611971_73612736
          Length = 766

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  atttacaacaaaaagcatttatggtatgtgacaacataactgtgcctggtcagatgacat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atttacaacaaaaagcatttatggtatgtgacaacataactgtgcctggtcagatgacat 280

                                                                       
Query: 81  aattaaaacgtaactggaaactggatatgccgaataacttgtgagaaatgtgcttggata 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aattaaaacttaactggaaactggatatgccgaataacttgtgagaaatgtgcttggata 340

                                                                       
Query: 141 ttaataataggttattcctaatacatcattgcaccttcctactttgaaaaactgaattct 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaataataggttattcctaatacatcattgcaccttcctactttgaaaaactgaattct 400

                                                                       
Query: 201 ttgcaaatctaagttttgacatactgagttctcttgaaatgatgtaccaaggtctgtttt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgcaaatctaagttttgacatactgagttctcttgaaatgatgtaccaaggtctgtttt 460

                                                                       
Query: 261 ttgtaaaagaaaaagaaatgtcccttttcagtgcttttcccccaacccactgtcattgta 320
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 461 ttgtaaaagaaaaagaaatgtcccttttcagtgcttttcccccaacccactgtcattgca 520

                                                         
Query: 321 aactgtcttacccattgaaacaatagtgttaagtaactacatccac 366
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 521 aactgtcttagccattgaaacaatagtgttaagtaactacatccac 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no322_c02.g1 MSMg01no322_c02.g1 CHROMAT_FILE:
MSMg01no322_c02.g1 PHD_FILE: MSMg01no322_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:01 2005
         (642 letters)



>mm_chr2_73762600_73763641
          Length = 1042

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctgaatttgctacagtactctggttatatagatagtcttctggcccttaagaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 332 tttcctgaatttgctacagtactctggttatatagatagtcttctggtccttaagaaaca 273

                                                                       
Query: 61  tatacagaaatgtcagcgggtataatgcttgcttttatatggatttgagaaataatgaaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 272 tatacagaaatgtcagcgggtataatgcttgctcttatatggatttgagaaataatgaaa 213

                                                                       
Query: 121 tatgagagaactgggctggagcagtggctcagtagttaagagcactgactgctcttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tatgagagaactgggctggagcagtggctcagtagttaagagcactgactgctcttccat 153

                                                                       
Query: 181 aggacccaggttcaattcccagcacccacatggcagcttacaactgtttctaatttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aggacccaggttcaattcccagcacccacatggcagcttacaactgtttctaatttctgt 93

                                                                       
Query: 241 tccaggtgatccaacaccgtcacacagacatacatgcaggtaaaacaatgtacatcaaag 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tccaggtgatccaacaccctcacacagacatacatgcaggtaaaacaatgtacatcaaag 33

                                           
Query: 301 attaaaataaagaaaatgtttaaaatatgaat 332
           ||||||||||||||||||||||||||||||||
Sbjct: 32  attaaaataaagaaaatgtttaaaatatgaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)