BAC Information

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BAC

Clone NameMSMg01-322H24
Chromosome2 (Build37)
Map Location 109,376,774 - 109,377,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322H24.T7 (MSMg01no322_h24.b1)MSMg01-322H24.TJ (MSMg01no322_h24.g1)
ACCAG441180AG441181
length726762
length of high quality
(start - end)
334 (388 - 721)41 (427 - 467)
definitionCHROMAT_FILE: MSMg01no322_h24.b1 PHD_FILE: MSMg01no322_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005CHROMAT_FILE: MSMg01no322_h24.g1 PHD_FILE: MSMg01no322_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAAATGTTCCACATAACAAGAAAGGCAAAGTCAGTGGATGTGTG
AACTATACTAGCAACCTTGTTTTGCCCAGTGGAAAGGTTGTTTGTTTGAC
TGTTTTTGACTTTTCTCTGGCATGTGTTATACATGTTAATACATATTGTC
ATAACAGAGCACATTTGTGTAACTAAAATTTGTGGTGATGCTATGTGTAA
AGAATTAAGGGATGAGAGATGGTGTATGCCAATGGGGTGAGACTGGGAAC
AATCACAGTCTTCATTTTTTTATATTATCAAGTAAGCAAGTAACACCTGA
ATAAGAAAAATGGAATTATTATATAACCTCCCACCATGCTATTAAGAACT
ATGGTTGTAAATGCAAAAAGAAACAATTTCCCCAGGCCTGAAATAGTTAT
TTCTGTTTTCAAGTAATAACATTATTATTTTCAACAAGAAAAATACAATT
CTTCCAATTGGTTGCCATAGCCCATACCATCAGAATGTTGTATCAGGGAT
TGATAAAGGGCTGTGAAAATCCGACACACTATGCTCACAGAGCATGTCCT
AAGAACAAGAGACATTTCTGCTAGTCTTTATAAGATAGTAAGACATGTCT
CAGAACAGGTTTGAGTGAGTAGGACCAAAATCAGAAGAAAAACACATGAG
GATAAAAACCTATGAAGGAAAAGAAG
GAGGGGGAANNNNGGNGGGGNGGCGGCCCGCCCCCCNCCGGCNNNNNCCC
GAGAAGGGGGAGGCCGGGGGGGNNCGGTTTCGAACCGANNNGNNNNNNNN
NNGTTTGCAAAAAAGNNGAGNNNNNNGNNNNNNGNNGNNNNNNGNNNNNN
NNGNNNANGNNCCCGGAGGGGNNANNNNNNANNGGANNNNNAAGGGGANA
AANAGGAANNAANNGNNNAGAAAAAAANAAAAAAGNNGGGAGGGNNGNAN
AGANAANAGGGGANNNNNNNNAGGAANNANAGAANAGNAGATTTTTATNT
NTAAGGNNTATGGNAGGNAANAGNNANTTANNAGAATGTNNTNTAAGGAN
NGGNGATGTTTTTTTTTTTNNNNNGGNGAGNNNNNNGNNNNNNNNNNNNN
TTTTTTTTCTCCCCCCCGCCCTGGTTAATTTGTACAATATCCTAAGGTAT
GCATGTTTTAACCTGATTAATATAAAAGGGAGGAAGCGGAGGTGATAAGG
TGAGTGACTTTTCTTTAGTCACAGAGCTGTAATAGCAGGGTTGAAATTCA
GACGCACGGGGCAGGCTGCAGACTCTGAAACCTTAATGGCTGTAGTGTCT
GCCTTCTGATAGGTGAGAAGATGGGAACCATAGGACACAGATTCTGGAGA
GTATTACAAGGGAAGCCAGGGAGCAAATAACACAAGGAGATTATTTTTTT
TTTTGGGAAACAGAGAGCGGAAAGGATCAGGCCATGAATAAATCTAGGAC
AGGAAAAATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_h24.b1 MSMg01no322_h24.b1 CHROMAT_FILE:
MSMg01no322_h24.b1 PHD_FILE: MSMg01no322_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
         (334 letters)



>mm_chr2_109376574_109377307
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctattaagaactatggttgtaaatgcaaaaagaaacaatttccccaggcctgaaatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctattaagaactatggttgtaaatgcaaaaagaaacaatttccccaggcctgaaatagt 260

                                                                       
Query: 61  tatttctgttttcaagtaataacattattattttcaacaagaaaaatacaattcttccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctgttttcaagtaataacattattattttcaacaagaaaaatacaattcttccaa 320

                                                                       
Query: 121 ttggttgccatagcccataccatcagaatgttgtatcagggattgataaagggctgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggttgccatagcccataccatcagaatgttgtatcagggattgataaagggctgtgaa 380

                                                                       
Query: 181 aatccgacacactatgctcacagagcatgtcctaagaacaagagacatttctgctagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatccgacacactatgctcacagagcatgtcctaagaacaagagacatttctgctagtct 440

                                                                       
Query: 241 ttataagatagtaagacatgtctcagaacaggtttgagtgagtaggaccaaaatcagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttataagatagtaagacatgtctcagaacaggtttgagtgagtaggaccaaaatcagaag 500

                                             
Query: 301 aaaaacacatgaggataaaaacctatgaaggaaa 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaacacatgaggataaaaacctatgaaggaaa 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)