Query= MSMg01no322_j03.b1 MSMg01no322_j03.b1 CHROMAT_FILE:
MSMg01no322_j03.b1 PHD_FILE: MSMg01no322_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:34 2005
(286 letters)
>mm_chr2_71021591_71022276
Length = 686
Score = 507 bits (262), Expect = e-148
Identities = 280/286 (97%)
Strand = Plus / Minus
Query: 1 ggtaacatcctcgtcccatgactacccctgcagacaaatgtctgttgccccgttgaaagc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 ggtaacatcctcgtcccatgactacccctgcagacaaatgtctgttgcattgttgaaagc 427
Query: 61 ctgactgcttttgactagctggcaaataaccaccgcagtcaagattggtgacctggcctc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 426 ctgactgcttttgactagctggcaaataaccaccccagtcaagattggtgacctggcctc 367
Query: 121 cagtggtgggagttggtgcccattttctgtttgtgagggtatatgttgggtgtggcctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagtggtgggagttggtgcccattttctgtttgtgagggtatatgttgggtgtggcctga 307
Query: 181 ccttactacttagtagcttccataaacagaggctccctgagactatagtccatgtgaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttactacttagtagcttccataaacagaggctccctgagactatagtccatgtgaggc 247
Query: 241 tgatgttgtccatcccagggcaaacagtcatcaccaccagcaaatg 286
|||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgatgtgggccatcccagggcaaacagtcatcaccaccagcaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no322_j03.g1 MSMg01no322_j03.g1 CHROMAT_FILE:
MSMg01no322_j03.g1 PHD_FILE: MSMg01no322_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:34 2005
(292 letters)
>mm_chr2_70864803_70865494
Length = 692
Score = 458 bits (237), Expect = e-133
Identities = 276/293 (94%), Gaps = 9/293 (3%)
Strand = Plus / Plus
Query: 1 tccaggaggggcgtgtgcccttttaca-ttgattggttagctctatctccaggggcctga 59
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggaggggcgtgtgccctttta-agttgattggttagctctatctccaggggcctga 259
Query: 60 caattggttaggctctggagacttctggtggctcactcattcaagctacccagtcttact 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caattggttaggctctggcgacttctggtggctcactcattcaagctacccagtcttact 319
Query: 120 tcaggccagaagacaaggcgtcctcggattggctgcctgcggctgcggtgggctgaccac 179
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 320 tcaggccagaagacaaggcgtcctccgattggctgcctgcggctgcagtggactgaccac 379
Query: 180 aggttcctggttctgggttctcctttctgggaaacagaagcttaggcctagtctcccaaa 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggttcctggttct-------cctttctgggaaacagaagcttaggcctagtctcccaaa 432
Query: 240 ctgccagtttttattttgtcctggggtcagcctggctctgctaactcagccct 292
|||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgccagtttgcagcttgtcctggggtcagcctggctctgctaactcagccct 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
