BAC Information

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BAC

Clone NameMSMg01-322K02
Chromosome2 (Build37)
Map Location 142,821,032 - 142,821,320
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322K02.T7 (MSMg01no322_k02.b1)MSMg01-322K02.TJ (MSMg01no322_k02.g1)
ACCAG441274
length729726
length of high quality
(start - end)
---291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no322_k02.b1 PHD_FILE: MSMg01no322_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005CHROMAT_FILE: MSMg01no322_k02.g1 PHD_FILE: MSMg01no322_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTACACCTTGAGA
AAAGCAGTGAGTTCCCTAATAACTATCTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAATTTAGACAGATTAGTTCA
GATGAATCTTTTATAGGTAGAATCACAGTGTGAGAAACCTAAAGGGGGAT
TTATCTCCACAGCACATGTAGGATAATCTGTAAATCATATCTTTTTCATA
TTACATTTCTATTAAAATGCTGCTTTTTGAGGATTGCATATAGTATTGAT
TATGTGGGAAAATACTAGCTTTATTCTTACCTCATATATCTTTAAGACAC
TATGATTTATGTGAAAATATCAATCACAAATGTTAATTATAGTAAAGGCA
TGTTGAGAAGCTGTATTTGTTTTTACCACACACGACCTAATACCCACAAG
AGCAAAGATGCTGATCTGCCACCCTGCCATGAATACTTGGAAGCGGGAGT
GTATATACATGTTTATACATACACAAGTGTGCATGCACCAGAACCCATTA
TAGGTAACGGTATCTTTAAACTTAAAGACTTAATATGTTATGTGTGATTC
CTCCACTCTCACCTCAATAAATAAATAAAGACTGGGCACTTCCAGATATT
CAATTAGGGGCTGAAGGGACGTAGTCCAAAGTAAAACTCTTACATTTAGA
GCAAAAAGAATACCGCAGATATGGAAATTGCAAAGAGAATAAAGATTCGG
AGGCCAGATGCGAGGCCTAAGTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_k02.g1 MSMg01no322_k02.g1 CHROMAT_FILE:
MSMg01no322_k02.g1 PHD_FILE: MSMg01no322_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
         (291 letters)



>mm_chr2_142820832_142821522
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaatttagacagattagttcagatgaatcttttataggtagaatcacagtgtgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaatttagacagattagttcagatgaatcttttataggtagaatcacagtgtgagaa 260

                                                                       
Query: 61  acctaaagggggatttatctccacagcacatgtaggataatctgtaaatcatatcttttt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaaagggggattgatctccacagcacatgtaggataatctgtaaatcatatcttttt 320

                                                                       
Query: 121 catattacatttctattaaaatgctgctttttgaggattgcatatagtattgattatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattacatttctattaaaatgctgctttttgaggattgcatatagtattgattatgtg 380

                                                                       
Query: 181 ggaaaatactagctttattcttacctcatatatctttaagacactatgatttatgtgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaatactagctttattcttacctcatatatctttaagacactatgatttatgtgaaa 440

                                                            
Query: 241 atatcaatcacaaatgttaattatagtaaaggcatgttgagaagctgta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatcaatcacaaatgttaattatagtaaaggcatgttgagaagctgta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)