Query= MSMg01no322_k09.b1 MSMg01no322_k09.b1 CHROMAT_FILE:
MSMg01no322_k09.b1 PHD_FILE: MSMg01no322_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:39 2005
(686 letters)
>mm_chr2_100792479_100793567
Length = 1089
Score = 1189 bits (615), Expect = 0.0
Identities = 668/687 (97%), Gaps = 5/687 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatcagttttccgtacaacttctcaatagtgctgtatgacagataagcagctgc 63
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 889 ggaattcatcagttttctgtacaacttctcagtagtgctgtatgacagataagcagctgc 830
Query: 64 ctctgtaatatgcactgaagaagagtatgaacagaaagcaaagatccctggagtcttcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctctgtaatatgcactgaagaagagtatgaacagaaagcaaagatccctggagtcttcag 770
Query: 124 tatttgctggtttgtcagtgcagactctcccaggtagtagcaccaatcaactcacaatga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tatttgctggtttgtcagtgcagactctcccaggtagtagcaccaatcaactcacaatga 710
Query: 184 tttttattcaatttttctccttgactgttgtttgatacaagggcttggataaatctctcc 243
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 709 tttttatccaatttttctccttgactgttgtttgatacaagggcttggataaatctcttc 650
Query: 244 ttaatctagacaatagtaggctgcatatcatggatcttgagtgaatttcctggagaaaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttaatctagacaatagtaggctgcatatcatggatcttgagtgaatttcctggagaaaca 590
Query: 304 ttgcagttttctatcccattgacattagtcatgtctaaaatggtgtaaatgacagcatgt 363
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 589 ttgcagttttctatcccattgacattagtcatgtctaaaatggtgtaagtgacagcgtgt 530
Query: 364 atcactagtggcctagttttcaatttcttgccgtac---aag-ctaatgatccagcttgt 419
||||||||||| ||||||||||||||| ||||||| | | |||||||||||||||||
Sbjct: 529 atcactagtgggttagttttcaatttct-gccgtacttgacggctaatgatccagcttgt 471
Query: 420 ggctatgctgtgagtgctagacctgtgatggacaggacatgttgatgaggaatttatttt 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 470 ggctatgctgtgagtgctagacctgtgatggacaggacgtgttgatgaggaatttatttt 411
Query: 480 gttgatcccagttattgacacttaaggacacttgtaaccatagtacccaccaggtagatt 539
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 410 gttgaccccagttattgacacttaaggacacctgtaaccatagtacccaccaggtagatt 351
Query: 540 atgttatgatatactttatgaagaggaagtaaaatcaaaccattatttcatgatggctat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atgttatgatatactttatgaagaggaagtaaaatcaaaccattatttcatgatggctat 291
Query: 600 actttaaaattatacatgctaattaaataaattatcactttaagggctatttgtaataat 659
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 290 acttaaaaattatacatgctaattaaataaattatcactttaagggatatttgtaataat 231
Query: 660 atgtaaagtcaaaatcagagttgtaat 686
|||||||||||||||||||||||||||
Sbjct: 230 atgtaaagtcaaaatcagagttgtaat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space: 729404
Effective search space used: 729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_k09.g1 MSMg01no322_k09.g1 CHROMAT_FILE:
MSMg01no322_k09.g1 PHD_FILE: MSMg01no322_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:39 2005
(663 letters)
>mm_chr2_100621667_100622728
Length = 1062
Score = 1259 bits (651), Expect = 0.0
Identities = 660/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 agaaaaaaatacgaagaaaaagaaaatctagaaatgtaagtggggaataaatcctgtttt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaaaataagaagaaaaagaaaatctagaaatgtaagtggggaataaatcctgtttt 260
Query: 61 atggttccagaagaattgaatgttgcagagcaatggggaaaaattatcagaacatgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggttccagaagaattgaatgttgcagagcaatggggaaaaattatcagaacatgaaag 320
Query: 121 ccaaaagcagcaaaatcaagaagcctcttccacatacggagggtcaggtagcaacaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaagcagcaaaatcaagaagcctcttccacatacggagggtcaggtagcaacaaggc 380
Query: 181 tctgttgagtcacgtgccctttaatctgtggagggttcacaatctagagcttcaatcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttgagtcacgtgccctttaatctgtggagggttcacaatctagagcttcaatcaat 440
Query: 241 agaatcacatccataataccacacagatctccagaaaggaaagctttcctaacatgaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatcacatccataataccacacagatctccagaaaggaaagctttcctaacatgaaat 500
Query: 301 ttacttcagattacagtaatctgagattacgtaataaaacctagagagctcccctaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ttacttcagattacagtaatctgagattacgtaataaaacctagagagttcccctaaaaa 560
Query: 361 taatgatccaaaaatatctttattttaaaatatgactatgatgatgctagttatatttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgatccaaaaatatctttattttaaaatatgactatgatgatgctagttatatttca 620
Query: 421 aaaattcttgattcatgaaagaaattataatttatttacaacataaaatatgtatccatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaattcttgattcatgaaagaaattataatttatttacaacataaaatatgtatccatc 680
Query: 481 aaaataggtccctataaaacctaggtaatcataaaaaaacatttaaaatctaaactcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaataggtccctataaaacctaggtaatcataaaaaaacatttaaaatctaaactcaaa 740
Query: 541 aatgtttgtctttagaggcaaggcatgttatctaagtaattatattcatacacaaaatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgtttgtctttagaggcaaggcatgttatctaagtaattatattcatacacaaaatta 800
Query: 601 ccaaaagtaaaaaatttaaatattggcctacatttttgcttatttatagctgattaattt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 ccaaaagtaaaaaatttaaatattggcctacatttttgcttatttatagctgat-aattt 859
Query: 661 cat 663
|||
Sbjct: 860 cat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
