Query= MSMg01no322_o01.b1 MSMg01no322_o01.b1 CHROMAT_FILE:
MSMg01no322_o01.b1 PHD_FILE: MSMg01no322_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:56 2005
(449 letters)
>mm_chr2_62377947_62378800
Length = 854
Score = 754 bits (390), Expect = 0.0
Identities = 430/454 (94%), Gaps = 19/454 (4%)
Strand = Plus / Minus
Query: 1 ggctacaccagacagaaacaaaaatgttgtatcaaacaaacaaccccaaacaacaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggctacaccagacagaaacaaaaatgttgtatcaaacaaacaaccccaaacaacaacaaa 480
Query: 61 caaaaaagggagaaaagaaatttacagcataacaaacaaccatcttttatgttattctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caaaaaagggagaaaagaaatttacagcataacaaacaaccatcttttatgttattctcg 420
Query: 121 cctctctaaaaataggctaaattaatttttattttcatgactgaagattgtcaaaaggtt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 419 cctctctaaaaataggctaaattaatttttatcttcatgactgaagattgtcaaaaggtt 360
Query: 181 tcactccccc-----ccccctgccatcttgaaatctttttctctgtgaggtactagccta 235
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcactcccccccacaccccccaccatcttgaaatctttttctctgtgaggtactagccta 300
Query: 236 ccactatagcactcaggaaactcttctgaagtgctccaaactcttcttaagattgctggt 295
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 299 ccactatagcactcaggaaactcttctgaagtgctccaaactctttttaagattgctggt 240
Query: 296 acttgaagagtatatatttctcaaggtcttctttttgttttggctctctctctctctctc 355
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 239 acttgaagagtatatatttctcaaggtcttctttttgt----------tctctctctctc 190
Query: 356 tctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtg 415
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 189 tctctctctctctctctctctctctctctctctctcactctctctc----tgtgtgtgtg 134
Query: 416 tgtgtgtgtgtgtgtgtgtatttgattatgagga 449
||||||||||||||||||||||||||||||||||
Sbjct: 133 tgtgtgtgtgtgtgtgtgtatttgattatgagga 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 854
Length adjustment: 10
Effective length of query: 439
Effective length of database: 844
Effective search space: 370516
Effective search space used: 370516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_o01.g1 MSMg01no322_o01.g1 CHROMAT_FILE:
MSMg01no322_o01.g1 PHD_FILE: MSMg01no322_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:56 2005
(654 letters)
>mm_chr2_62211607_62212659
Length = 1053
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 ctggctcccttctaaagccctctcctggcttatactgcttgacaaagatccttgatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctcccttctaaagccctctcctggcttatactgcttgacaaagatccttgatttta 260
Query: 61 atacacacagtgtggatagcagggaacaatcttgaaacccaggatgtggcacgactgtct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 atacacacagtgtggatagcagggaacaatcttgaaacccaggatgcggcacgactgtct 320
Query: 121 caaatgtaggacgtgcaaaactcacgtcagtgccaaacctgtaacagagccactgaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatgtaggacgtgcaaaactcacgtcagtgccaaacctgtaacagagccactgaaact 380
Query: 181 cgtcatgcactgtatcctgttaattagtaatacaatctgatatataaccaggcttttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcatgcactgtatcctgttaattagtaatacaatctgatatataaccaggcttttcaa 440
Query: 241 cttcaaattcgggctcattccaacttctacaaatgagatgagctcctgattcaattacag 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcaaattcgggctcattccaacgtctacaaatgagatgagctcctgattcaattacag 500
Query: 301 cctctctttgccttcattcaagcatttcctaccccgcccctacctctttcaaaatcattt 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctccctttgccttcattcaagcatttcctaccccgcccctacctctttcaaaatcattt 560
Query: 361 tcaccatctttttctgcttgtcatttcttagaggttttggagaaattacaaaaccttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaccatctttttctgcttgtcatttcttagaggttttggagaaattacaaaaccttaaa 620
Query: 421 tcacactctttcctgggataataaaaatactttaaaattgcccagatgctgttgacttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacactctttcctgggataataaaaatactttaaaattgcccagatgctgttgacttca 680
Query: 481 gcaagagaaatcagagaaagctgttgaagagagactgacaatattttcattagcaggaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaagagaaatcagagaaagctgttgaagagagactgacaatattttcattagcaggaag 740
Query: 541 ggattaaatgcaaccattctctcccccctcccccccccatcaaattgcagaaccaagatc 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 ggattaaatgcaaccattctctcccccc-cccccccccatcaaattgcagaaccaagatc 799
Query: 601 tgagcgggagcagagacctttgggtatggaatccacactgtcttggggtactgc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgagcgggagcagagacctttgggtatggaatccacactgtcttggggtactgc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
