BAC Information

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BAC

Clone NameMSMg01-322P10
Chromosome2 (Build37)
Map Location 57,713,318 - 57,871,332
singlet/doubletdoublet
Overlap geneGalnt5
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneA330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P10.T7 (MSMg01no322_p10.b1)MSMg01-322P10.TJ (MSMg01no322_p10.g1)
ACCAG441516AG441517
length747739
length of high quality
(start - end)
287 (71 - 357)665 (71 - 735)
definitionCHROMAT_FILE: MSMg01no322_p10.b1 PHD_FILE: MSMg01no322_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:02 2005CHROMAT_FILE: MSMg01no322_p10.g1 PHD_FILE: MSMg01no322_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,871,046 - 57,871,332)(57,713,318 - 57,713,982)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGTTTTCCAGTGGCAGGCTGAGACTGTGTTCTCAGACTCTTTT
GTATTTGTCAGCCATTGTTGCCCTACCCAGACTGGGTTGTGTAAGACAAC
CTATTATCTCTCCCTTTACTATATGTTCAGTCTACCAGTTCTTGTCATCT
AGAGACCCCATACTAATACACAAAGGGATCAGCACTTTTAGCAATGGGAT
AATAAGAACATTTGGGGGGGTCTAGCTACAAGGAAATAAGACTATCATGA
GAATTTATTTTCTCCAAGCTTATGGACACAGGCAATGCCAGAACTTCCAG
ATGGGGAGTTGTCATTAAGTGCCCACCCGCCCGAAAGAGTGTAGTAAATG
AGAATGTAGATTCTGGACTTCGGTGTTTAGAATGCAGGCACCTCCATTCC
TACTAACCAGCTTGAGAGAATGGCAGGCGTTATCTACAGAACCAGAGTTG
AAGGGGCATCTGATGGGAGAGAAGGTTAGGGGAAGAGTAGGACAAGAGAT
GGGTAGAAAAGAAGACAGGAGAAGAAAAGAGACAGGATCTGGAAGAGATG
TCTTTACTACATACAAATGCCAGCTTANAAAAAAAAACAAGCAAATTTTT
GAAAAAAAGGGAAAAGCTGTTTTATAGTCCCACATTCTAATAATCGGTAC
AAGCAAGGGATGATAATGCATATTAAATCCCTGTGTGAAATGTGTGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAACAATCCTGGCAAAACAAACTTCTTGCTATTTCAT
TGAGATCAATTTCCTACTCAGAAATGTTTTAGAATTAATTCACACAGCAT
AATGAATTCCTATAATTTAATGATTTCTGCTAATTAGGATAGAGGCAATT
GATGAGATGTGTGGTTTCGTTCTTGAAATGATGTCATACACACAATATGC
TGGGAATAGAGAATTTTAAGATTAATATTGACAAATAATACTGAGGTTTC
CTATAATGTTAAAAAAATACACACTTCAGAAAGTCAAACATAATTCTCAT
TTTCTCTCCATAGGAGAATCAATATGATTGAAAGAAAGTCCAAATTAGTC
AGGGCTGATTTTAATACTGCACTGCTGGAAGTGAAAAGAAAAAAGAACCC
TGGATTTCTCCGTTTATTCAATCTTCTTCTCCCTATATACTTAATATGAC
CATTTGATTCTGAGTTATGGTTATGTGGATGGGAATCCTTTAAAACAACA
AAAAGACAAATATCCATAAATCAATAGTCTGAGAAAGCTTGGAGCTCACT
CCATTTTAAGAAAATGTTGGGATTCATCGGTTTCACTGAAAACTTAGTTT
GAATAATAAACTATTTTAATTTGAATTGTCACTGCACAGACTTTGGTAAC
AATTTACTATCCAATTGTGCTTAAGAAGCTGTGGTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p10.b1 MSMg01no322_p10.b1 CHROMAT_FILE:
MSMg01no322_p10.b1 PHD_FILE: MSMg01no322_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:02 2005
         (287 letters)



>mm_chr2_57870696_57871382
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctgagactgtgttctcagactcttttgtatttgtcagccattgttgccctacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 637 caggctgagactgtgttctcagactcttttgtatttgtcagccattgttggagtacccag 578

                                                                       
Query: 61  actgggttgtgtaagacaacctattatctctccctttactatatgttcagtctaccagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 actgggttgtgtaagacaacctattatctctccctttactatatgttcagtctaccagtt 518

                                                                       
Query: 121 cttgtcatctagagaccccatactaatacacaaagggatcagcacttttagcaatgggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttgtcatctagagaccccatactaatacacaaagggatcagcacttttagcaatgggat 458

                                                                       
Query: 181 aataagaacatttgggggggtctagctacaaggaaataagactatcatgagaatttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aataagaacatttgggggggtctagctacaaggaaataagactatcatgagaatttattt 398

                                                          
Query: 241 tctccaagcttatggacacaggcaatgccagaacttccagatgggga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctccaagcttatggacacaggcaatgccagaacttccagatgggga 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no322_p10.g1 MSMg01no322_p10.g1 CHROMAT_FILE:
MSMg01no322_p10.g1 PHD_FILE: MSMg01no322_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:02 2005
         (665 letters)



>mm_chr2_57713118_57714182
          Length = 1065

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggcaaaacaaacttcttgctatttcattgagatcaatttcctactcagaaatgtttt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggcaaaacaaacttctagctatttcattgagatcaatttcctactcagaaatgtttt 260

                                                                       
Query: 61  agaattaattcacacagcataatgaattcctataatttaatgatttctgctaattaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattaattcacacagcataatgaattcctataatttaatgatttctgctaattaggat 320

                                                                       
Query: 121 agaggcaattgatgagatgtgtggtttcgttcttgaaatgatgtcatacacacaatatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggcaattgatgagatgtgtggtttcgttcttgaaatgatgtcatacacacaatatgc 380

                                                                       
Query: 181 tgggaatagagaattttaagattaatattgacaaataatactgaggtttcctataatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggaatagagaattttaagattaatattgacaaataatactgaggtttcctataatgtt 440

                                                                       
Query: 241 aaaaaaatacacacttcagaaagtcaaacataattctcattttctctccataggagaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaatacacacttcagaaagtcaaacataattctcattttctctccataggagaatc 500

                                                                       
Query: 301 aatatgattgaaagaaagtccaaattagtcagggctgattttaatactgcactgctggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatgattgaaagaaagtccaaattagtcagggctgattttaatactgcactgctggaa 560

                                                                       
Query: 361 gtgaaaagaaaaaagaaccctggatttctccgtttattcaatcttcttctccctatatac 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gtgaaaagaaaaaagaaccctggatttccccgtttattcaatcttcttctccctatatac 620

                                                                       
Query: 421 ttaatatgaccatttgattctgagttatggttatgtggatgggaatcctttaaaacaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatatgaccatttgattctgagttatggttatgtggatgggaatcctttaaaacaaca 680

                                                                       
Query: 481 aaaagacaaatatccataaatcaatagtctgagaaagcttggagctcactccattttaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagacaaatatccataaatcaatagtctgagaaagcttggagctcactccattttaag 740

                                                                       
Query: 541 aaaatgttgggattcatcggtttcactgaaaacttagtttgaataataaactattttaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaatgttgggattcatcggtttcactgaaaacttagtttgaataataaactattttaat 800

                                                                       
Query: 601 ttgaattgtcactgcacagactttggtaacaatttactatccaattgtgcttaagaagct 660
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaattgtcactgcacagactttggtaacaatttactatccaattgtgcttaagaagct 860

                
Query: 661 gtggt 665
           |||||
Sbjct: 861 gtggt 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)