BAC Information

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BAC

Clone NameMSMg01-323B17
Chromosome2 (Build37)
Map Location 59,436,476 - 59,597,273
singlet/doubletdoublet
Overlap geneLOC100039016, Tanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323B17.T7 (MSMg01no323_b17.b1)MSMg01-323B17.TJ (MSMg01no323_b17.g1)
ACCAG441620AG441621
length1,2391,270
length of high quality
(start - end)
279 (132 - 410)655 (137 - 791)
definitionCHROMAT_FILE: MSMg01no323_b17.b1 PHD_FILE: MSMg01no323_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:17 2005CHROMAT_FILE: MSMg01no323_b17.g1 PHD_FILE: MSMg01no323_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,436,476 - 59,436,754)(59,596,619 - 59,597,273)
sequence
NCCAGCCTNNNNNNAACCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCACTTTGTAGNTGAGGCCCGTAAAAAACTCTTCGTNNTA
NTTTCATCTCAAGGGGTGGCTTTATAGACGTGTTCCACCACCACTCATGG
CTCGTGCCTCGATCCTTTTCAATTAATGTTTACAGCCGATGTCTAAGAAT
AATGAAAATGTTTGCCAGTCCCAGTTAATAATTGACAAGTTTCCTGCAGA
CTTTGCTATAACTAAATTTCAAAACAGTAACTAGGAACCTCTTTGCGCAG
TGTTAAGACAGTTGATGCCATTACATCATGAGATCATGATGTTATTAAAG
GGACTTTTTAGAAAAAATAAAAGGCAATCTTTTCCAGGTATGTTTCCTGC
AGGGATGTGGTGATTTATTCAGCTCAGGACTGCATTGGGCTGCAGATGAC
AGAAGCCGGCGATAAAAGCATAGCCGGGTGGGGTCCCTTTTCCTTAGGTA
AGAAGTCTGGGATCCTGGTGTGGTACAGCGCGCATGTCATCCCAGGACCT
GGGAAGGGGTGGCAGGATACAGAGTTCTAGGCCAGCTTGGACTAGCTATT
GACTCAGTCTTAAAAATAACAGAATGTCTGGAGGTGGGCAGTTCACTGTG
AAGGAGAACAAGGGGCCTTTCTGTGTTCCTTTTCTGTCAGAGTCTACCGC
TTTCCTGGAAACCTCTCACTGTGGAGCCACTGGACGCTATGCCTGTAAGG
AAGCCGGAGGTAGGAGGTGTTTTGAGGCGGCTCCTTTGTTTGTTTTGTTT
GTTCTTTAACATAGGCTTTATTTTTTTTGACCCTGTGGTCCTATACCTTT
TTTTTTTTTTTTCCACCGTCCCTTACTTCTATTTTTATTTTATCTAAAGT
CTGCTTTTTACTTTTTTTTCCATCAAATGAAACCAGTCTTTTTATCTCCT
AAATCATCCTCGTTATAAAATAAACACTGTTTCTTCATTTCTGAATACTC
TTTGTTTTATCAAGTTAACCTTTTTATACCCTTCTTTCAAGTTACTTATA
AACTCTTTTTCCCAATTCTCCCCCATTTTCTCTGTCCCTTTCCTCTTCTT
CCCTAATAATTCAACATCACAACGTTCCATCTATTCGTACCTCATCTCTT
CATTTCCACTTAAACACCTCTATTTTTCTCCCATTCTTTTCATCTCTTAT
ATACATATCATACACATTTACTAATCAACCTATTATCTT
NCCAACTCTNNNNNAAATCATGGTTAGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAGCCCCCCAAGNTAT
ACAGAGAAACCCTGTNTCAACCTTAAACACCCCCCGCAAACTATTAATGC
ATCTATTGAACGCCACAAGCATTAACATATGGTATACGTATACTTTGACT
TANAAGTGTGTGGGGTGTGATACATTGACTTTTATGGCAAAAAGAAAAGA
GGCTTCAATCAGTTTGCATTTTCTTTTCTTTGTCCCTAATCCAAAGCCCC
CTCTATAGAAAAATCACAGATGTTTAACTTTTAAAAAGCTTTCCAAAGTC
ACCATGTGCTCTTAAGTGAGTTTGTCTAGTGAAAGTCTCCGATTCTCAGC
CAAAGCCTGCTCTTTTTTATTCTGGAGGGGTAATGTGTTTGTATAAAACA
AAAACAAAACAAAAAACCTAGGTCAACTGGCTGGCATTGCATGTCTCCCA
AACCCAGCGAGGTCAGAATTCAGAGGATACAAGACCCAAGCCTCAAACAC
TGCAAATACACCCAACTCAACTATTTCTGCCACTTGTATACAATTTCAAG
AATTCACATTAGCTAAACAAATCTCTGTCAATTGCCCAAGGGGAAAAAAA
CCTCCCAAATACATTTGATTCAGTGAAGCATTTTTGCAAGAGACTCTCAG
GTTTCTTTCAGAAATGGAGAATGCTACTTACTATGCATAGTCTTTAGGGA
AAGATGCAGACATCATGGAAAAGGTACTCTTACCAGTCGCACTGGGCTCT
GAGGGCTTGGACCCTTCTCCGAACGGGATCATAACTGGATCTCCCGGCAC
CCTGGGGCTTTCCACATACTTGGGCTTCCCTGACGGGACCTGCGGAGGGG
AAGATCTGAATGTAGCTAAATTTTTCCAAATGCCAACAGAGCTTCAAAAC
ATACATGTGTGTCCTTACCAGGACCCCAACCCGCTTAAGGCTGGCCCCTT
CCCCCCTTGAAAACCCGGGCTGTCAGTTCAAAGCAAACCCAAAAATGTCC
CGTCTTGGCCTGCCAACGAAAACCAGGGCGAGCTCCCCTTTGAAAAAACG
TAAATTCTGGATCGAAACCCAAACCCCCTTCCCTCTGGCTGAGATTTTCG
GGGGGGGCCCTTATTGGGGGAAAAAAGTGGGTTTTTTACGGTTCTAAACC
CAACAAAGGGTGAAAACGCGGTTTTTCTAGGAAAGGGAAATTTCCTTCCC
TTGGAAACAAAAATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_b17.b1 MSMg01no323_b17.b1 CHROMAT_FILE:
MSMg01no323_b17.b1 PHD_FILE: MSMg01no323_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:17 2005
         (279 letters)



>mm_chr2_59436276_59436954
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttccaccaccactcatggctcgtgcctcgatccttttcaattaatgtttacagccgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttccaccaccactcatggctcgtgcctcgatccttttcaattaatgtttacagccgatg 260

                                                                       
Query: 61  tctaagaataatgaaaatgtttgccagtcccagttaataattgacaagtttcctgcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaagaataatgaaaatgtttgccagtcccagttaataattgacaagtttcctgcagac 320

                                                                       
Query: 121 tttgctataactaaatttcaaaacagtaactaggaacctctttgcgcagtgttaagacag 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tttgctataactaaatttcaaaacagtaactaggaacctctttgcgcactgttaagacag 380

                                                                       
Query: 181 ttgatgccattacatcatgagatcatgatgttattaaagggactttttagaaaaaataaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatgccattacctcatgagatcatgatgttattaaagggactttttagaaaaaataaa 440

                                                  
Query: 241 aggcaatcttttccaggtatgtttcctgcagggatgtgg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaatcttttccaggtatgtttcctgcagggatgtgg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no323_b17.g1 MSMg01no323_b17.g1 CHROMAT_FILE:
MSMg01no323_b17.g1 PHD_FILE: MSMg01no323_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:18 2005
         (655 letters)



>mm_chr2_59596419_59597473
          Length = 1055

 Score = 1183 bits (612), Expect = 0.0
 Identities = 644/655 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaactattaatgcatctattgaacgccacaagcattaacatatggtatacgtatacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 855 caaactattaatgcatctattgaacgccacaagcattaacatatgttatacgtatacttt 796

                                                                       
Query: 61  gacttanaagtgtgtggggtgtgatacattgacttttatggcaaaaagaaaagaggcttc 120
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 795 gacttagaagtgtgtggggtgtgatgcattgacttttatggcaaaaagaaaagaggcttc 736

                                                                       
Query: 121 aatcagtttgcattttcttttctttgtccctaatccaaagccccctctatagaaaaatca 180
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 735 aatcagtttggattttcttttctttgtccctaatccaaagctccctctatagaaaaatca 676

                                                                       
Query: 181 cagatgtttaacttttaaaaagctttccaaagtcaccatgtgctcttaagtgagtttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagatgtttaacttttaaaaagctttccaaagtcaccatgtgctcttaagtgagtttgtc 616

                                                                       
Query: 241 tagtgaaagtctccgattctcagccaaagcctgctcttttttattctggaggggtaatgt 300
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 615 tagtgaaagtctccgattctcagccaaagcctgctcttaactattctggaggggtaatgt 556

                                                                       
Query: 301 gtttgtataaaacaaaaacaaaacaaaaaacctaggtcaactggctggcattgcatgtct 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 555 gtttgtataaaacaaaaacaaaacaaaaaaccaaggtcaactggctggcattgcatgtct 496

                                                                       
Query: 361 cccaaacccagcgaggtcagaattcagaggatacaagacccaagcctcaaacactgcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cccaaacccagcgaggtcagaattcagaggatacaagacccaagcctcaaacactgcaaa 436

                                                                       
Query: 421 tacacccaactcaactatttctgccacttgtatacaatttcaagaattcacattagctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tacacccaactcaactatttctgccacttgtatacaatttcaagaattcacattagctaa 376

                                                                       
Query: 481 acaaatctctgtcaattgcccaaggggaaaaaaacctcccaaatacatttgattcagtga 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acaaacctctgtcaattgcccaaggggaaaaaaacctcccaaatacatttgattcagtga 316

                                                                       
Query: 541 agcatttttgcaagagactctcaggtttctttcagaaatggagaatgctacttactatgc 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcattcttgcaagagactctcaggtttctttcagaaatggagaatgctacttactatgc 256

                                                                  
Query: 601 atagtctttagggaaagatgcagacatcatggaaaaggtactcttaccagtcgca 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atagtctttagggaaagatgcagacatcatggaaaaggtactcttaccagtcgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)