BAC Information

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BAC

Clone NameMSMg01-323J18
Chromosome2 (Build37)
Map Location 51,780,933 - 51,835,937
singlet/doubletdoublet
Overlap geneRbm43, LOC100041634, Nmi
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1
Downstream geneTnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323J18.T7 (MSMg01no323_j18.b1)MSMg01-323J18.TJ (MSMg01no323_j18.g1)
ACCAG441985AG441986
length1,2981,298
length of high quality
(start - end)		818 (43 - 860)729 (89 - 817)
definitionCHROMAT_FILE: MSMg01no323_j18.b1 PHD_FILE: MSMg01no323_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:21 2005CHROMAT_FILE: MSMg01no323_j18.g1 PHD_FILE: MSMg01no323_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,780,933 - 51,781,735)(51,835,209 - 51,835,937)
sequence
NNCCCGATTTNNNNNNNGCCACTGGGCGCTAAGACTCACTAAGGGAGAGG
ATCCGCGGAATTCTTTCACATGTCTGACGCCGCTAAAGCAAGACCCATCC
TGGGCGTCTTGTAGACAAATGCTAGTGACGTCACCATCCACCCTCTCCTG
ACACAGGACATGGTATTTGCTCAGTGTTAGATGATAAAACTCACACTTGT
GTTTCAGATAAAGGAAAATGTCTGTGTCAAGCACAAGTGTTTCTGGGCTG
CCGGCAGGCTCAGCTACAAAGGTCCCAAGTATCGACGCCGAGTTCTCCCT
TTTCTGCAGGATCCTTCTAGGGTTCTCTCCATTCCAGTTTCTCCTTTCAC
CAGCATCTTTCCTGTTGTTTTCTAAAGGGGAAATGGCTTTTGATATCAAA
GCCTGTTTGAGCTTCATGATGGCCAGAAATGAACCTTGCACAGAGATTTT
CCCACTGGGTCCCAATGGGCTAAAGTTTAAAGTTGGGATTTTCTTTTTCA
GGTCCACTACTAGGCTTTCTAGCTCAATTTGAGTGCGAAAAACAGACAGA
TCAAGAATGGCCATCACATAGTTGAAGACCTACAATAAGAAAGAGAAAAC
AGTCAAGACAACACTGCCTAACGGAGCAAAACCTGCACACATTGTCTCCT
GCCTCTCTTCCCAGTGGCTCAGCTCTAAGGTGAAGTCCAGGCTTCTGGCT
CCTTGATCTAGATCAGCCCTACAGAGAGCCTACGCTGTTCCACATGGAGG
AACAGCCCCCACCACACACCCCAGAAATGAAAAGCAAAACAATATTTTGA
GACAAAATGCTGTTTTGAAACGAAGTGCTTTTCAGAATCCATTGACATAA
AAACTGTTGGTATAAGCTCCACAGACAGACATCCCCCTGCAGTTGGGCCT
GCCCTACTTCTCCCAGCTTAAATTTCAATAGCTGGCTACACCAGAAAGCT
GGATTCCCTAAAGAACTGCGGGGAAACTACGGGGTAAAATTTAAATTTCG
TCTCATACCACCTTTTTTCGCTCTTTCAAGACCCTTTTAAAGCCCACTTA
ATTATTCCCCACAAAAAAACCTTCACCCGGTTTTTTCCTTAAAAAAAAAA
AGTCTTGGGGCCTTTTTAAATTTAGGGGCGCCTTTTTTTATAACCTTAAA
CCACTTTTTTGAACAATTTTTCTTTGTACCTAAAAACCTCTCTTTCCTAA
AAATAGGAAGAAAATTGTTATTTTTGTTTAAAAATTCCAAAAAGAGGGGG
GGGTGNAATTCCCGCCCCCCCCCTTTCTTAGTGAAAGGAAGAAAGTGG

NNCCTAGTTTTTTNNNAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAATCTTCATCTGAAGGCT
ACTAGGAGAAGGCTAGCTCCCATGTAGTTAGAAGGCTCTTTAAACCCCCA
TTCCCCACAGTGACACACTTTCTCCAACAAGGCCAAACATCCTAATACTG
CCATTTCCTGGGCCAAGCACATTCAAACCACCACCGTACTTGATATCACA
TGAGATTGGGTATTACCTGCTGTTTACTTTGGGTCTCAGGTTGGTAAGCC
TCGGTTTTTCCCCTTTACAGTCTGCATACACTTTAACAGCACAGAATCTT
CTGACTGATCATGGGTGCATATCCATGACCCAGGAAAGATTTAATAAGAT
GAAGCCTGTTAGTTACTCTTTAAGTTTATGATTATTATTTCACTAGGCCT
TATTTATTTCATTACATTTGATTTACTTTATGATATTGCTATTTTATATT
TGCTTGCATAAATTTACTCACAGAAGTCAATATAAAATCTTACATTGAGC
TTTAACATTAGGCTCAGATCAGTCAACTGATGCTGTGGCATCCAATTGGT
AGACAGAAATAAATCACCACACAGCAGGCACTAATGTAGTAGATTCTGCA
GGATATTTGATCACATTGTGAACTCTGAGATTGTATTGTTTGCTGAAAAA
ACTTGGTTCTAGTTGTGGTGTGGTTCAGCCTTAGCACATACTTTAAATCC
CTTTGGCTAGACTATAGCCCTTAGTACATACCTTTAATTTCAAACTATGA
AGGTAAACTTAGTTTATAGAANAAAAGCACCCATGTTTGAAAGTGATATC
TAATTGAGTGGCAGGCAAAGTGATGAACCAGAGAAAGATTTNAACAAATA
GGATATTTTTCACTCTCACAAGGACAAAAAAGAAAGAAAATGACTTGAGA
AAAAAAGAAATGGGGGTAGAAAGACAATTTTATTGGGACGTTGTACAAAA
AAAGGTTCCGAAAAAAAAAAACCTTAAACAGTGGAAACAAAATGAGCCCA
AAAGGGGGAGGAGCCCCAAGACTAAACCAATTTTCAAAATTAGGTTGGGA
GGAGGCGAACAATCTTTCCCCACCTGAAAAAAACAAAATAACCCCCCTCT
TTCAAAGAATTTTTAAACCCAAAAATGAATTGACCCCCCCCCGGCTTCAA
AAAAAAAAAGGGAATTTATTCCCTTTCCTCAAGGGAACCTCCCCCCCACA
AAAAAAAGGGGGGAGGTCCAAAAGCCTCTTTTCAGGGGAAGCTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_j18.b1 MSMg01no323_j18.b1 CHROMAT_FILE:
MSMg01no323_j18.b1 PHD_FILE: MSMg01no323_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:21 2005
         (818 letters)



>mm_chr2_51780718_51781935
          Length = 1218

 Score = 1514 bits (783), Expect = 0.0
 Identities = 798/803 (99%)
 Strand = Plus / Plus

                                                                        
Query: 16   gaattctttcacatgtctgacgccgctaaagcaagacccatcctgggcgtcttgtagaca 75
            ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 216  gaattctttcacatgtctgacgctgccagagcaagacccatcctgggcgtcttgtagaca 275

                                                                        
Query: 76   aatgctagtgacgtcaccatccaccctctcctgacacaggacatggtatttgctcagtgt 135
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276  aatggtagtgacgtcaccatccaccctctcctgacacaggacatggtatttgctcagtgt 335

                                                                        
Query: 136  tagatgataaaactcacacttgtgtttcagataaaggaaaatgtctgtgtcaagcacaag 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336  tagatgataaaactcacacttgtgtttcagataaaggaaaatgtctgtgtcaagcacaag 395

                                                                        
Query: 196  tgtttctgggctgccggcaggctcagctacaaaggtcccaagtatcgacgccgagttctc 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396  tgtttctgggctgccggcaggctcagctacaaaggtcccaagtatcgacgccgagttctc 455

                                                                        
Query: 256  ccttttctgcaggatccttctagggttctctccattccagtttctcctttcaccagcatc 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  ccttttctgcaggatccttctagggttctctccattccagtttctcctttcaccagcatc 515

                                                                        
Query: 316  tttcctgttgttttctaaaggggaaatggcttttgatatcaaagcctgtttgagcttcat 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  tttcctgttgttttctaaaggggaaatggcttttgatatcaaagcctgtttgagcttcat 575

                                                                        
Query: 376  gatggccagaaatgaaccttgcacagagattttcccactgggtcccaatgggctaaagtt 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  gatggccagaaatgaaccttgcacagagattttcccactgggtcccaatgggctaaagtt 635

                                                                        
Query: 436  taaagttgggattttctttttcaggtccactactaggctttctagctcaatttgagtgcg 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  taaagttgggattttctttttcaggtccactactaggctttctagctcaatttgagtgcg 695

                                                                        
Query: 496  aaaaacagacagatcaagaatggccatcacatagttgaagacctacaataagaaagagaa 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  aaaaacagacagatcaagaatggccatcacatagttgaagacctacaataagaaagagaa 755

                                                                        
Query: 556  aacagtcaagacaacactgcctaacggagcaaaacctgcacacattgtctcctgcctctc 615
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 756  aacagtcaagacaacactgcctaatggagcaaaacctgcacacattgtctcctgcctctc 815

                                                                        
Query: 616  ttcccagtggctcagctctaaggtgaagtccaggcttctggctccttgatctagatcagc 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  ttcccagtggctcagctctaaggtgaagtccaggcttctggctccttgatctagatcagc 875

                                                                        
Query: 676  cctacagagagcctacgctgttccacatggaggaacagcccccaccacacaccccagaaa 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  cctacagagagcctacgctgttccacatggaggaacagcccccaccacacaccccagaaa 935

                                                                        
Query: 736  tgaaaagcaaaacaatattttgagacaaaatgctgttttgaaacgaagtgcttttcagaa 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  tgaaaagcaaaacaatattttgagacaaaatgctgttttgaaacgaagtgcttttcagaa 995

                                   
Query: 796  tccattgacataaaaactgttgg 818
            |||||||||||||||||||||||
Sbjct: 996  tccattgacataaaaactgttgg 1018


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 818
Length of database: 1218
Length adjustment: 10
Effective length of query: 808
Effective length of database: 1208
Effective search space:   976064
Effective search space used:   976064
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no323_j18.g1 MSMg01no323_j18.g1 CHROMAT_FILE:
MSMg01no323_j18.g1 PHD_FILE: MSMg01no323_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:21 2005
         (729 letters)



>mm_chr2_51835034_51836162
          Length = 1129

 Score = 1402 bits (725), Expect = 0.0
 Identities = 728/729 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctgaaggctactaggagaaggctagctcccatgtagttagaaggctctttaaacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 catctgaaggctactaggagaaggctagctcccatgtagttagaaggctctttaaacccc 845

                                                                       
Query: 61  cattccccacagtgacacactttctccaacaaggccaaacatcctaatactgccatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cattccccacagtgacacactttctccaacaaggccaaacatcctaatactgccatttcc 785

                                                                       
Query: 121 tgggccaagcacattcaaaccaccaccgtacttgatatcacatgagattgggtattacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgggccaagcacattcaaaccaccaccgtacttgatatcacatgagattgggtattacct 725

                                                                       
Query: 181 gctgtttactttgggtctcaggttggtaagcctcggtttttcccctttacagtctgcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gctgtttactttgggtctcaggttggtaagcctcggtttttcccctttacagtctgcata 665

                                                                       
Query: 241 cactttaacagcacagaatcttctgactgatcatgggtgcatatccatgacccaggaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cactttaacagcacagaatcttctgactgatcatgggtgcatatccatgacccaggaaag 605

                                                                       
Query: 301 atttaataagatgaagcctgttagttactctttaagtttatgattattatttcactaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atttaataagatgaagcctgttagttactctttaagtttatgattattatttcactaggc 545

                                                                       
Query: 361 cttatttatttcattacatttgatttactttatgatattgctattttatatttgcttgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttatttatttcattacatttgatttactttatgatattgctattttatatttgcttgca 485

                                                                       
Query: 421 taaatttactcacagaagtcaatataaaatcttacattgagctttaacattaggctcaga 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 484 taaatttactcacagaagtcaacataaaatcttacattgagctttaacattaggctcaga 425

                                                                       
Query: 481 tcagtcaactgatgctgtggcatccaattggtagacagaaataaatcaccacacagcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcagtcaactgatgctgtggcatccaattggtagacagaaataaatcaccacacagcagg 365

                                                                       
Query: 541 cactaatgtagtagattctgcaggatatttgatcacattgtgaactctgagattgtattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cactaatgtagtagattctgcaggatatttgatcacattgtgaactctgagattgtattg 305

                                                                       
Query: 601 tttgctgaaaaaacttggttctagttgtggtgtggttcagccttagcacatactttaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttgctgaaaaaacttggttctagttgtggtgtggttcagccttagcacatactttaaat 245

                                                                       
Query: 661 ccctttggctagactatagcccttagtacatacctttaatttcaaactatgaaggtaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccctttggctagactatagcccttagtacatacctttaatttcaaactatgaaggtaaac 185

                    
Query: 721 ttagtttat 729
           |||||||||
Sbjct: 184 ttagtttat 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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