BAC Information

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BAC

Clone NameMSMg01-323M16
Chromosome2 (Build37)
Map Location 34,905,499 - 34,906,104
singlet/doubletsinglet
Overlap geneHc
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323M16.T7 (MSMg01no323_m16.b1)MSMg01-323M16.TJ (MSMg01no323_m16.g1)
ACCAG442115AG442116
length1,1911,227
length of high quality
(start - end)
627 (135 - 761)329 (139 - 467)
definitionCHROMAT_FILE: MSMg01no323_m16.b1 PHD_FILE: MSMg01no323_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:45 2005CHROMAT_FILE: MSMg01no323_m16.g1 PHD_FILE: MSMg01no323_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCTTNNNNNNGCGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGAGAGATCCACCTGCCTCTAAGAGTCTCCGTGCTGG
GGTTAAATAGGTGTGTGCCCCTTCCAACCTTCCAAGAGGCTTGTTTTGTT
TTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTCGAGACAGGGTTTCTCT
GTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTGGCCTCG
AACTCAGAAATCCACCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGCA
TGTGCCACCACCATCCGGCTTCAAGGAGGCTTTTTATCTACTTAGAAATA
ACTGATAATGAAGTAAATGGATTTGTTGTTTTTTATTATTTTACTTTATT
TATTTTTTTCTCTATAATTAAAACCCAAAATGCTATTTGAAAATATAAAA
GCCATTAGGAACTAACGACTGTCTTTGATTGGGTGGGGGCAGGGTAAAAA
CCTTTCTCTACTCAATTTCATGTGTCCAAAGGTCTAAAAATACAGTGTCA
ATTTCCCCACAAAAATGGTTGATACTCTACCTGACTGGTCCGGCGTGTAA
ACAGGTTTGTCTGTATGGATGAAGAGAATTCCATTGTTATAGGTAATTGG
TATTTTCTTTGATTTTGAAAAGTGTTTTGACACAACTTCCAGATACACGT
GAGAGACTGGGCTTTCTTCTCTAGGAACTTGATTGGGCTGTAGCTGTAAA
AGTAACAACAAACGAGCATAACTCTAAGCATGCCACAAACCACAGCCAAC
TCATTAGAACCAAAACCCGATATTGCATGCTACTTCATTTGGAAAGTGGT
ATAGCCCTACCATTGAAGCCTAACAATCAGAACTTTCAAGGTCATTTGTG
GACTTACTAGTTGAAACCCCATTCCACTTAAACCCAACCCATGTAAAACC
GACCAATTATAAACCAAGAAAATTGGCAAAAAAACTGTCAGAAACAAAAT
TATATTTTTTCCAAAAAACCCTTCCTTGGCCCTAAAGGTTATGGTAGAAA
AAATTTTTTCTTTAACCCTCCTTCCAAAAGCTTTTTTTTTTTTATTTTAA
AAAAATTCTTCTAAAATAAAATCAGGGAAAAAAATAACTTCCACTTTTAG
ATAGGGTGCCTCTTTCTCTTTCTATAACATTGTGGATTCTC
NCCCGTCCTNNNNNNNACTGAGGGCAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGATTCGTGAGACTG
GNCAGGGAGCCTCAGGGAGCCCTCATGAACCCCCGCCGGGATTACAAATA
TGTGCCACCATACCAGCTCTTTATGTGGGTGCTGGGGATGGAACCCAGGC
ACACATGTTTATACAATGTGCTGGCTAGTTTTTACTGTCAACTTGGCACT
CTTGGGAAGGGAAACCTCACATGAGCAGTTGTGCAGTTCAGATGTGTCAT
ATCTCTGAGGGATCGTCTTAACTGATGATTGATGTGGGAGGACCCAGCCC
ACCGTGGGCAGCATTATCCCTAGGCAGGTGGGTCTTGGCTATATAAGAAA
GGTAGCTAAGTGTTTTGGCATGATGGTGCCCACCTTTAATCCCAGCACTC
GGAGAGACAGAGGTGGGTGGGTGTCTGAGTTCAAGGCCAGCCTGGTCTAG
TTTCAGGATAGGGGGGACACATAGAGAAACCATGTCTCAAAAAAGAAGAA
GGAGAAGGAGGAAGGAGGAGGAGAAGGAGGAAGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNG
NNNNNNNNNNNNNNNNNNGNGGNGNNNGNGTGTTTTTTTTTTTTTTGTGT
TTTTTTGTGTTTTTTGGTTTTTGTTGGTATTTTTTGTTTTTGTTTTTTTT
TTTTTTAGGTTAATGTATTTTTTTTATAAAAGNGATAAAAAATGATTTAA
TATTTTATATTTTTTTATGTTAATAATAATAATTTTTTTAAATAAGTGTT
AATAAAGTTTATTTATTATAATTTGTAAATGAGTATTGTGAAGATTGAAT
AAATATATATATGATTTTATAGTTAGAATTATTGTTTTTAATTTTATATT
AATTTAAATTTATAGTGAATATAAAAAATTATTTGTATAAGTTAATATAT
TTTATAAATATGATAAATATAATTTATATTATTATGTAGTATTTAATTAT
TTTTTATGTTAATTTAATTTGTATGATATTAAGTATTTAATGTTATTTAG
TATTAGATAGATGTTTATATAATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_m16.b1 MSMg01no323_m16.b1 CHROMAT_FILE:
MSMg01no323_m16.b1 PHD_FILE: MSMg01no323_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:45 2005
         (627 letters)



>mm_chr2_34905278_34906304
          Length = 1027

 Score = 1127 bits (583), Expect = 0.0
 Identities = 601/611 (98%), Gaps = 9/611 (1%)
 Strand = Plus / Plus

                                                                       
Query: 21  ttttgtttttgtttttgtttttgttttttcgagacagggtttctctgtgtagccctggct 80
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttttgtttt-gtttttgtttttgttttttcgagacagggtttctctgtgtagccctggct 280

                                                                       
Query: 81  gtcctggaactcactatgtagaccaggctggcctcgaactcagaaatccacctgcctctg 140
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 gtcctggaactcactatgtagaccaggctggcctcgaactcagaaattcacctgcctctg 340

                                                                       
Query: 141 cctcccaagcgctgggattaaaggcatgtgccaccaccatccggcttcaaggaggctttt 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctcccaagcgctgggattaaaggcatgtgccaccaccatccggcttcaaggaggctttt 400

                                                                       
Query: 201 tatctacttagaaataactgataatgaagtaaatggatttgttgttttttattattttac 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tatctacttagaaataactgataatgaagtaaatggatttgttgttttttattattttac 460

                                                                       
Query: 261 tttattta----tttttttctctataattaaaacccaaaatgctatttgaaaatataaaa 316
           ||||||||    |||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttatttagaaattt----ctctataattaaaacccaaaatgctatttgaaaatataaaa 516

                                                                       
Query: 317 gccattaggaactaacgactgtctttgattgggtgggggcagggtaaaaacctttctcta 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gccattaggaactaacgactgtctttgattgggtgggggcagggtaaaaacctttctcta 576

                                                                       
Query: 377 ctcaatttcatgtgtccaaaggtctaaaaatacagtgtcaatttccccacaaaaatggtt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctcaatttcatgtgtccaaaggtctaaaaatacagtgtcaatttccccacaaaaatggtt 636

                                                                       
Query: 437 gatactctacctgactggtccggcgtgtaaacaggtttgtctgtatggatgaagagaatt 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gatactctacctgactggtccggcgtgtaaacaggtttgtctgtatggatgaagagaatt 696

                                                                       
Query: 497 ccattgttataggtaattggtattttctttgattttgaaaagtgttttgacacaacttcc 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccattgttataggtaattggtattttctttgattttgaaaagtgttttgacacaacttcc 756

                                                                       
Query: 557 agatacacgtgagagactgggctttcttctctaggaacttgattgggctgtagctgtaaa 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 agatacacgtgagagactgggctttcttctctaggaacttgattgggctgtagctgtaaa 816

                      
Query: 617 agtaacaacaa 627
           |||||||||||
Sbjct: 817 agtaacaacaa 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)