BAC Information

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BAC

Clone NameMSMg01-323N23
Chromosome2 (Build37)
Map Location 119,276,995 - 119,277,572
singlet/doubletsinglet
Overlap geneInoc1
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323N23.T7 (MSMg01no323_n23.b1)MSMg01-323N23.TJ (MSMg01no323_n23.g1)
ACCAG442174AG442175
length1,2431,249
length of high quality
(start - end)
311 (95 - 405)578 (137 - 714)
definitionCHROMAT_FILE: MSMg01no323_n23.b1 PHD_FILE: MSMg01no323_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:55 2005CHROMAT_FILE: MSMg01no323_n23.g1 PHD_FILE: MSMg01no323_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCCTGNNNNNGCCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCATTTCCAGTGGCCACACCTTAAGTCCAACTATCTGNAACTCCC
GTTCCAGGGCAGCCTTCTTCTTCTGACTTCCATGGGATGGGTGCATGGTA
CACATACATACATGCAGGCAGGCAAAACATTCAGACGCCAGGCCAGACAG
TGGTGGTGCACGCCTTTAATCCCAGCACTCAAGAGGCAGAGGCAGGCAGA
ACTCTGGGATTTCCAAGCTAGTGAGTTCCAGGACAGCCAGGGCTACACAG
AGAGAGAATGGCTCAAAAAAAAAAAAGGAAGAAAGACAAGAAAAAAGTTA
GCATAGTAATAATAAAATGCTTTAGTTGTTTATCTGAACCAAGACGTTTA
GTCTCACTAGGAAAGCACTCCCATGCGTACACATCTGCATCACAGATATC
TTGTGTCGTGTTCCGTTTTGGAGACAGGGTCTCCTGTAGCTCAAGGCTGT
GACTCCCTAACCAGCCGTCTACCCCACCCAAGTGCTAGAGCTACAAATGT
TCAAATCTAGTAGTAAACAGCGCTGGCAAAGGTACCGGGAAGAGGACTGC
CACGCCTGGCACACTGAGGGCCTAGTGCCCACATGGCAGCCAACCACTCC
AGCTCTAGGGCGAACCAGCACCTTCCTCTGACCTCCATGGGCTCCTGCAC
ACATGATACGCTTACATGCATTCATGAACAACATGGACACATTAAGTATT
TATTTAANTAACACTTTAAGAAGGGGGACTTCTCTTGAGAGTGACAACTA
ATTCTTGCCCTTACAGCATTGACTTGCCGCAGGCAAGTGAGCCCAACCCC
GCTGGAACTGGGGCGGCAGGGAACACCCCAAAATCCACAAAATGTTTCCG
GACCATATCGGGGAATGCCCCTGAAAAACTGAGCAAGTTTTCCTGGAAAA
TTCCCTGCATGAATGCCGGGAATCTAAACCGTCTGGGTTGGGAAAAGGCC
CCTCCACCTCTCCCTATATCCTCTTTTTTACACCCCTTCCCTCCCCCTTT
CTCACTTCTTCCCTCATTCACTACACACACCTCTCTTCTCCATCCCCTCA
CCTTTCACCTCTCCATCCCCCACCTCCCACTCTTCCACCTTCCTCTCATT
CTAACCTTTCTTTACACTTTATATTAACACTCTCTCTTCTCCTACCCTTA
ACTTTCAAACCTATTCTCACTTTCTCCACTTTCATCACTCTCT
CGTTTCTCNNNNNAAATGACGCGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATATAAGCTCCCTTCCCGAA
TGTTGAAATTACCTGTAACCATTGAATTTCTTACCAAATGTGTATCTGCT
GTGTGTAGTGGTACATATTTTGCATTTCTAGTATTTGAAGTGTGGAGGCA
GAAGTATCAGGAGTTCAAGTCAGCCTGGGCTACATGAACTTGTGTTGAAG
AATATAGAAAAGAAAAGATGTGATAGAAGTTCAGATTCTGAAGGATTTCC
TTCCAAATTCCTTTCTAGCAGTTTGTCTTGTGCATAGCAGTTGATCCTGT
TTTACTTCTGAGTTAAAGGAATTATCTTTGATGTACTAATTTCTTATTGG
TCTCTGTGTTTTTCTATTTCAGAGCTATGGTTTTCTCTGGCTTAGCTTTT
TTTAAGTTAAGATGACTTCAAGGCTGCGTTGTGGAACGCAGGCAGACCCA
TCACAGTGTTTGCCTGCTTCAGTTGCAGCAGTACCAGTACTACAGTGCAG
GCCTGCTCTCTACATACGACCCTTTCTATGAGCAACAGCGCCACTTGCTT
GGACCCAAAAAGAAGAAATTCAAGGAAGACAAGAAGCTTAAAGGTAAGTA
TATTTATTCTTTCTTAATTTCAGAACTGTGTGTGGTACATTTTAACTTTT
GGTAGAAAATTACTTTTATCTGTAAAAGTATAGTCTCTTTCCTAATTAAC
GACATTATTGACCTTATTTACATTTGTTGTGTGGTCTTTTATAGACATAG
ATAGACTTAACGAACTTATAGGTTGCAAGCCACGTGGACTGTGATCCTTA
CCGTTTGGTAGTAAGGAATTAGAATTCTGTGGAACAAAGTTTTTGTTGGC
TACATAAAAGCTGAAATCAACCTTGGGCTGTCTGAANACCTTGTTTTAAC
GCCCTCCCCCTTTTCTTTTAACCCAAGAAACCAAAAAAAACTATTGGTTG
TAGTTTGCTTCCCCAAAGTGTTTAGGCAAAAAAAGTTCCCTTCCCTTTAA
ATCTTGGAAACCCTGGCCTTCGAAGGAAAGTATTCTGGAGAGTGAAAAAA
CAATTGGTTTAAGTTTCTTCCAAAATGGAACCCTTTGGATATTTCTTGGG
GGTGGGTCTACCAGAATGTCGGAAACTCCTTTTTTCTTTTTTTAGACTCT
CATATAGACTTTGGAAAATACCCGGATAAAAAATTGTGTTTACCACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_n23.g1 MSMg01no323_n23.g1 CHROMAT_FILE:
MSMg01no323_n23.g1 PHD_FILE: MSMg01no323_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:55 2005
         (578 letters)



>mm_chr2_119276696_119277673
          Length = 978

 Score = 1081 bits (559), Expect = 0.0
 Identities = 573/583 (98%), Gaps = 10/583 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgtatctgctgtgtgtagtggtacatattttgcatttctagtatttgaagtgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aatgtgtatctgctgtgtgtagtggtacatattttgcatttctagtatttgaagtgtgga 818

                                                                       
Query: 61  ggcagaagtatcaggagttcaagtcagcctgggctacatgaacttgtgttgaagaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggcagaagtatcaggagttcaagtcagcctgggctacatgaacttgtgttgaagaatata 758

                                                                       
Query: 121 gaaaagaaaagatgtgatagaagttcagattctgaaggatttccttccaaattcctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaaaagaaaagatgtgatagaagttcagattctgaaggatttccttccaaattcctttct 698

                                                                       
Query: 181 agcagtttgtcttgtgcatagcagttgatcctgttttacttctgagttaaaggaattatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agcagtttgtcttgtgcatagcagttgatcctgttttacttctgagttaaaggaattatc 638

                                                                       
Query: 241 tttgatgtactaatttcttattggtctctgtg-----tttttctatttcagagctatggt 295
           ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 637 tttgatgtactaatttcttattggtctctgtgggaaa-----ctatttcagagctatggt 583

                                                                       
Query: 296 tttctctggcttagctttttttaagttaagatgacttcaaggctgcgttgtggaacgcag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tttctctggcttagctttttttaagttaagatgacttcaaggctgcgttgtggaacgcag 523

                                                                       
Query: 356 gcagacccatcacagtgtttgcctgcttcagttgcagcagtaccagtactacagtgcagg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gcagacccatcacagtgtttgcctgcttcagttgcagcagtaccagtactacagtgcagg 463

                                                                       
Query: 416 cctgctctctacatacgaccctttctatgagcaacagcgccacttgcttggacccaaaaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cctgctctctacatacgaccctttctatgagcaacagcgccacttgcttggacccaaaaa 403

                                                                       
Query: 476 gaagaaattcaaggaagacaagaagcttaaaggtaagtatatttattctttcttaatttc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaagaaattcaaggaagacaagaagcttaaaggtaagtatatttattctttcttaatttc 343

                                                      
Query: 536 agaactgtgtgtggtacattttaacttttggtagaaaattact 578
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agaactgtgtgtggtacattttaacttttggtagaaaattact 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)