BAC Information

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BAC

Clone NameMSMg01-324D24
Chromosome2 (Build37)
Map Location 119,793,209 - 119,793,849
singlet/doubletsinglet
Overlap geneMga
Upstream geneLOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403
Downstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324D24.T7 (MSMg01no324_d24.b1)MSMg01-324D24.TJ (MSMg01no324_d24.g1)
ACCAG442454AG442455
length720730
length of high quality
(start - end)		618 (45 - 662)641 (86 - 726)
definitionCHROMAT_FILE: MSMg01no324_d24.b1 PHD_FILE: MSMg01no324_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:31 2005CHROMAT_FILE: MSMg01no324_d24.g1 PHD_FILE: MSMg01no324_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCCATTTTTGTTACACTTTACATTGTTGTATTTATTCTGGGAACTTCA
CATCCATCATGTGAAATTGAGAATCATTTTGTTAAGTCTGACTAAAACAA
AAACCTGCTGAGGATTGCATTAAACGAATTGGGGAAAATTTTGTATCTTA
ATGTTGAGTCTTCTGGTCCACGAACAGGGTAGGTATGGGCAGTATGTTCA
GGTCTCCATTTCTCTTAGAAATATATTTTGATTCTCAGCATATAGATCTG
GTACATTTTATTTAGATTTAGCACTAAACATCTCTTTGTTTGGGTGCTAT
TCCAAGGCATGCAGATTTTCTACTTGAATGTCCAATTGTTGTTTCTAGCA
TGTAGATATATCTGGTTCTTGTAGCTAGAAACTTCACTAATAAGTTCACC
TCCTAGAGACAGCAGCTTTTGGTCTGGATATACATAGTTTAGTGATTCTC
CTACTAAAGGCCATCTTGGTTGTTTCCAAGTTTTAGTGACGAACAAAGCT
GTCATAAACACCCTTGATGCCCTGCAGTGGCGGTGCATGCCTTTAATCCC
AGCACTTGGGAGGCAGAGGCAGAGAGGCAGAGGCAGAGAGGCAGAGAGGC
AGAGAGGCAGAGAGGCAGAGAGGCAGAGAAGCAGAGAGGCAGAGAGAGAG
AGAGACAGAGAGAGAGGGGN

CACAAATTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGAGAACATTGG
AGGAACCTGGAAAAAGCTCCACCCTGACTAAGAAGCATGATCTCAGTCGA
CCAATAACTCGCCTTTTATACACCTGTAAATACATGGAATGTTTTTAAGG
ATATAATTATGTCAGATTTAGCATTTTCTTTTATATATTAAATATATATC
TTTAATTTCTGCTTTTGAAAGTGATTATTTTTTTAGAAATAACAGAAGTT
TGGCAGTTGAAAGGCAAGACATGTGAACCTGAAATAAACCAATTATACTA
ATTAAAGCAGAATTTGGTGTTGGGAGGTTTGTGCCTGGTTGAAGAATTCT
TTATGCCCTCAGACATATTTGAGAGAGGGTTCCATTGAAGAGATCTTTTC
TGAAGCTTCTTGACTGGAAAGCTTTCGATCTGTCATTTGGGAAGACCTTT
GGTATTCTAGTCCTTGTAGCATGTCTCAATTGGAACTTCAAGATTATGTA
CAATTTGATGGCAAATATTTGCTGTTCCATAGTGAGAATAGTTTCATAAT
ACCACTGTCTTTATCTGCTGCCTTGGGGAACAACAGGACAGAAACACAAT
CTTATGTCTGGAGACAATAGGTGTTCTTTTTAAATTTGTGTGTATATATT
GGCTGTGTGTGCCTTGTTGTGTACATGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_d24.g1 MSMg01no324_d24.g1 CHROMAT_FILE:
MSMg01no324_d24.g1 PHD_FILE: MSMg01no324_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:31 2005
         (641 letters)



>mm_chr2_119793009_119794049
          Length = 1041

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgagaacattggaggaacctggaaaaagctccaccctgactaagaagcatgatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgagaacattggaggaacctggaaaaagctccaccctgactaagaagcatgatctca 260

                                                                       
Query: 61  gtcgaccaataactcgccttttatacacctgtaaatacatggaatgtttttaaggatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgaccaataactcgccttttatacacctgtaaatacatggaatgtttttaaggatata 320

                                                                       
Query: 121 attatgtcagatttagcattttcttttatatattaaatatatatctttaatttctgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatgtcagatttagcattttcttttatatattaaatatatatctttaatttctgcttt 380

                                                                       
Query: 181 tgaaagtgattatttttttagaaataacagaagtttggcagttgaaaggcaagacatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaagtgattatttttttagaaataacagaagtttggcagttgaaaggcaagacatgtg 440

                                                                       
Query: 241 aacctgaaataaaccaattatactaattaaagcagaatttggtgttgggaggtttgtgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctgaaataaaccaattatactaattaaagcagaatttggtgttgggaggtttgtgcc 500

                                                                       
Query: 301 tggttgaagaattctttatgccctcagacatatttgagagagggttccattgaagagatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttgaagaattctttatgccctcagacatatttgagagagggttccattgaagagatc 560

                                                                       
Query: 361 ttttctgaagcttcttgactggaaagctttcgatctgtcatttgggaagacctttggtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttctgaagcttcttgactggaaagctttcgatctgtcatttgggaagacctttggtat 620

                                                                       
Query: 421 tctagtccttgtagcatgtctcaattggaacttcaagattatgtacaatttgatggcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctagtccttgtagcatgtctcaattggaacttcaagattatgtacaatttgatggcaaa 680

                                                                       
Query: 481 tatttgctgttccatagtgagaatagtttcataataccactgtctttatctgctgccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttgctgttccatagtgagaatagtttcataataccactgtctttatctgctgccttg 740

                                                                       
Query: 541 gggaacaacaggacagaaacacaatcttatgtctggagacaataggtgttctttttaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggaacaacaggacagaaacacaatcttatgtctggagacaataggtgttctttttaaat 800

                                                    
Query: 601 ttgtgtgtatatattggctgtgtgtgccttgttgtgtacat 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtgtgtatatattggctgtgtgtgccttgttgtgtacat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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