Query= MSMg01no324_h01.b1 MSMg01no324_h01.b1 CHROMAT_FILE:
MSMg01no324_h01.b1 PHD_FILE: MSMg01no324_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:45 2005
(492 letters)
>mm_chr2_79111834_79112728
Length = 895
Score = 528 bits (273), Expect = e-154
Identities = 408/493 (82%), Gaps = 67/493 (13%)
Strand = Plus / Plus
Query: 4 gaattccagcttcctgt-cacttacctcatctaatcaatgctgat-gctttttt--cccc 59
|||||||||||||| || ||||||||||||| ||||||||||| | |||||||| ||||
Sbjct: 204 gaattccagcttccggtacacttacctcatcgaatcaatgctg-tggcttttttcccccc 262
Query: 60 cgctgtcagaactaagcacagaatattcaagtgttaactaaggaggacagaatgtaatgc 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 cgctgtcagaactaagcacagaatattcaagtgttaactaaggagaacagaatgtaatgc 322
Query: 120 tagcaaaaaacaaaaaaacaaaaaaacaaaaaacaaaaaaaaaaacaaacaaataaaaca 179
||| | ||||||||||
Sbjct: 323 tag-------------------------------agaaaaaaaaac-------------- 337
Query: 180 aaacaaaacaaaacaaaactatgatccctgtcttatctcagtcttcctccagttaatgat 239
| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 -------------c----ctatgatccccatcttatctcagtcttcctccagttaatgat 380
Query: 240 gtgaaatcactcaaacacagaatctcactggggctcccactcaaaagctaaaggtgtgtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaaatcactcaaacacagaatctcactggggctcccactcaaaagctaaaggtgtgtg 440
Query: 300 ctggcaaataaaacatcattgccataaagacgactgctttacatttcagcagggctgggt 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ctggcaaataaaacatcattgccataaagacgactgctctacatttcagcagggctgggt 500
Query: 360 tacacccgagtagttccgctatgttgggctgtttctgcaatttatgcatttgccaaagtg 419
| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcacctgagtagttctgttatgttgggctgtttctgcaatttatgcatttgccaaagtg 560
Query: 420 tgcctattgactttttttccctgacaccatattgttttcataaaacttttatcattgttg 479
|||| |||||||||||| ||| ||||| ||||||||||||| |||||| ||||||||||
Sbjct: 561 tgcccattgacttttttcccccaacaccgtattgttttcatagaactttcatcattgttg 620
Query: 480 aaaacaccagtca 492
|||||||||||||
Sbjct: 621 aaaacaccagtca 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space: 426570
Effective search space used: 426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_h01.g1 MSMg01no324_h01.g1 CHROMAT_FILE:
MSMg01no324_h01.g1 PHD_FILE: MSMg01no324_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:45 2005
(538 letters)
>mm_chr2_79302932_79303869
Length = 938
Score = 1025 bits (530), Expect = 0.0
Identities = 536/538 (99%)
Strand = Plus / Minus
Query: 1 aaagtagaaggaaaaggtatattaggattagctgacttaaagctactttctcatctttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaagtagaaggaaaaggtatattaggattagctgacttaaagctactttctcatctttca 487
Query: 61 acttttgataacaatccatttttagagtctccaactctaaggtaaataacctatagaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acttttgataacaatccatttttagagtctccaactctaaggtaaataacctatagaaca 427
Query: 121 cagatacatgagttttctcttttaccccccacagcatccaaaagagtcaggaaaagatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cagatacatgagttttctcttttaccccccacagcatccaaaagagtcaggaaaagatag 367
Query: 181 ctaagagagaacctactttcactccaagcacattgcccacagcccaaggacatgtcttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctaagagagaacctactttcactccaagcacattgcccacagcccaaggacatgtcttaa 307
Query: 241 aacgtagacaatgatgctgtagctacacagtgctagtgaaacagagaactgagtctccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aacgtagacaatgatgctgtagctacacagtgctagtgaaacagagaactgagtctccac 247
Query: 301 caccatccagagagtagctccctcatgtccttattaatgtctgaggttaaaattaaatat 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 246 caccatccagagagtagctccctaatgtccttattaatgtctgaggttaaaattaaatat 187
Query: 361 ttattcattttttatacttcatgatttaagataggaacatcagattaaatattactactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttattcattttttatacttcatgatttaagataggaacatcagattaaatattactactc 127
Query: 421 ctcttctctctcgaccacttaagacacatggatttgtgacttctttttgacagatagtac 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctcttctctctcaaccacttaagacacatggatttgtgacttctttttgacagatagtac 67
Query: 481 aggtagagagatagtcatggagcagtaaacacagggaggagatgagagagagcgcgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aggtagagagatagtcatggagcagtaaacacagggaggagatgagagagagcgcgca 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
