TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTGTTCGATTT
TCTGAAGTCCACCTTCTTGAGTTCTCTTTATATATGTTGGATATTAGTCC
CCTATCTCATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCCTGATCTTACAGCACATGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTTTCACAATTTT
CTTAACATCATTTGTATATCAAAAATCATTAAATCAAAAAAGCCTAGACA
TAGTGGTACATGCCTTTAATCCCAGCACTTGGAAGGCAAAGGCAGAAGGA
TCTCTGTGAGTAACAGGGTAACCTGGTCTACATGGAGAGTTCCAGGATAG
CCTTGAAAAACCAATAAACAAACAAACAAAAATCTTTAGGCCAACTCCTG
AATATGTCTCCAAAGGCAATGAAATCATAATATAGGAAATGCCAACACAT
TTATGTTTGTTGTGGTGCTATTGAAATCTAAGAAATCAGGCTGGGCCTCC
ATTCAACAGAATAGATAATGAATATGTGCCCTACATACTCCATTGACTAT
AATTCAT

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAAAATTTGGTTTTGACACAT
TGGTTTTGAAGGAATTTCTGGAGTTTATATTTCTTTTTGTAATTTTTAGC
TCATTATTCAGTGTCAATTTATGCTTTTATATTTCCAAAGATAACAACAC
CCTTAAGCTTTTAAAATTCTGTTATGTGGTTTGCTATCGTTCAGTAAATT
TTTGTATGTGTAAGGAAGGTTTTAATTTGGTACAACCAAAATCTTGGGTA
TTAGCATCCTAATAGACATTCACATATGATTTCTTATATTTAGAACCACA
GGGCCTGGCATCTTGGTGGGGATTTGATTAAGCATCTTATACCTAAATAA
GCAGTTGATCATCTTCTCATCATGTACTTAACAGATAGTGATTGAGGGGT
AAAGGAACAGTGAAAATGGATGAAATGTTTGTCTAAACAATATATGGCAT
TCTTTGACTAAAATCCAACTTCAAGGGCTTTTCAGTCACCATATGGATTT
GTGGAACTGCAAAGAGTTTCTCCACAAAGGCTATATCAGGTGCTAAATAG
CATAAAACAACCTACAGTATACTCAGGGTTGTTAATCCACAGACAGATAC
ACAGATATTGGCAGTGAACCTAAGAATCTTAATTTTATTAAAAAGCACCA
GAGGGCAGATGCTGACCAAAATACAAAACCTGGCCAGTGAAAAAGCTGCC
ATAAAATTT

Query= MSMg01no324_j14.g1 MSMg01no324_j14.g1 CHROMAT_FILE:
MSMg01no324_j14.g1 PHD_FILE: MSMg01no324_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:57 2005
         (683 letters)



>mm_chr2_21343338_21344422
          Length = 1085

 Score = 1230 bits (636), Expect = 0.0
 Identities = 673/686 (98%), Gaps = 4/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaaaatttggttttgacacattggttttgaaggaatttctggagtttatatttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaaaatttggttttgacacattggttttgaaggaatttctggagtttatatttcttt 260

                                                                       
Query: 61  ttgtaatttttagctcattattcagtgtcaatttatgcttttatatttccaaagataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaatttttagctcattattcagtgtcaatttatgcttttatatttccaaagataaca 320

                                                                       
Query: 121 acacccttaagcttttaaaattctgttatgtggtttgctatcgttcagtaaatttttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacccttaagcttttaaaattctgttatgtggtttgctatcgttcagtaaatttttgta 380

                                                                       
Query: 181 tgtgtaaggaaggttttaatttggtacaaccaaaatcttgggtattagcatcctaataga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 381 tgtgtaaggaaggttttaatttggtacaatcaaaatcttgggtattaacatcctaataga 440

                                                                       
Query: 241 cattcacatatgatttcttatatttagaaccacagggcctggcatcttggtggggatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cattcacatatgatttcttatatttagaaccacagggcctggcatcttgatggggatttg 500

                                                                       
Query: 301 attaagcatcttatacctaaataagcagttgatcatcttctcatcatgtacttaacagat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 attaagcatcttatacctaaataagcagttgaccatcttctcatcatgtacttaacagat 560

                                                                       
Query: 361 agtgattgaggggtaaaggaacagtgaaaatggatgaaatgtttgtctaaacaatatatg 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 agtgattgaggggtaaaggaacagtgaaaatgaatgaaatgtttgtctaaacaatatatg 620

                                                                       
Query: 421 gcattctttgactaaaatccaacttcaagggcttttcagtcaccatatggatttgtggaa 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gcattctttgactaaaatccaacttcaagggctttttagtcaccatatggatttgtggaa 680

                                                                       
Query: 481 ctgcaaagagtttctccacaaaggctat--atcaggtgctaaatagcataaaacaaccta 538
           ||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 681 ctgcaaagaatttctccacaaaggctattgatcagctgctaaatagcataaaacaaccta 740

                                                                       
Query: 539 cagtatactcagggttgttaatccacagacagatacacagatattggcagt-gaacctaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 741 cagtatactcagggttgttaatccacagacagatacacagatattggca-tcgaacctaa 799

                                                                       
Query: 598 gaatcttaattttattaaaaagcaccagagggcagatgctgaccaaaatacaaaacctgg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaatcttaattttattaaaaagcaccagagggcagatgctgaccaaaatacaaaacctgg 859

                                     
Query: 658 ccagtgaaaaagctgccataaaattt 683
           |||||| |||||||||||||||||||
Sbjct: 860 ccagtggaaaagctgccataaaattt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space:   723475
Effective search space used:   723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)