Query= MSMg01no324_k12.b1 MSMg01no324_k12.b1 CHROMAT_FILE:
MSMg01no324_k12.b1 PHD_FILE: MSMg01no324_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:01 2005
(684 letters)
>mm_chr2_41155414_41156497
Length = 1084
Score = 667 bits (345), Expect = 0.0
Identities = 376/387 (97%), Gaps = 4/387 (1%)
Strand = Plus / Minus
Query: 5 gaattcatctgacc-cgcttagagcacagccattgaaattgaattttagttttagtatca 63
|||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 gaattcatctgaccac-cttagagcacagccatagaaattgaattttagttttagtatca 328
Query: 64 gtgtttaaatagtgccaacattattggacattttagtgaaaccttctgagactttaagga 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 327 gtgtttaaatagtgccaacattattggacattttattgaaaccttctgagactttaagga 268
Query: 124 ttggagttttcgtatcttaaagcaaatatgtaagaacagtaatcacacagaaagcatata 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 ttggagttttcgtatcttaaagcaaaaatgtaagaacagtaatcacacagaaagcatata 208
Query: 184 cagcacaaacacatatatacaccaactcacacttatatacagcacaaacatatatatac- 242
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 cagcacaaacacatatatacaccaactcacacttatatacagcacaaacacatatataca 148
Query: 243 -caactcacacttatatacagcacaaacacatatatacaccaactcacacttatatacag 301
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 147 ccaactcacacttatatacagcacaaacacatatatacaacaactcacacttatatacag 88
Query: 302 cacaaacacatatatacaccaactcacacttatatacagcacaaacacacatatatgtat 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cacaaacacatatatacaccgactcacacttatatacagcacaaacacacatatatgtat 28
Query: 362 acacacatacagcaaataaaacaatac 388
|||||||| ||||||||||||||||||
Sbjct: 27 acacacattcagcaaataaaacaatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_k12.g1 MSMg01no324_k12.g1 CHROMAT_FILE:
MSMg01no324_k12.g1 PHD_FILE: MSMg01no324_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:01 2005
(653 letters)
>mm_chr2_40973687_40974739
Length = 1053
Score = 1131 bits (585), Expect = 0.0
Identities = 636/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 1 ttatgtagaaccagaagcatcatggctcctgaaggcaggaacagaaaactgagttcttgg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgtagaaccagaagcatcatagctcctgaaggcaggaacagaaaactgagttcttgg 260
Query: 61 gctgatagtcaaaggaggcaagggagcaagagaaaacaaggaaagtaaaacctagaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgatagtcaaaggaggcaagggagcaagagaaaacaaggaaagtaaaacctagaaaca 320
Query: 121 tttttgtcacgtggctgagaaaactcaggaatgagacaatgagcacaaaccacaatccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgtcacgtggctgagaaaactcaggaatgagacaatgagcacaaaccacaatccga 380
Query: 181 aggggctaagaaataaatatagaaaaattactaaaacttttctgatcttgtccaaaagta 240
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggctgagaaataaatattgaaaaattactaaaacttttctgatcttgtccaaaagta 440
Query: 241 aaggacattggcattctttgaaagcgaaaggaaggtgtttcattgagaagaggaagttta 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggacattggcattctttgaaagtgaaaggaaggtgtttcattgagaagaggaagttta 500
Query: 301 cgtgataaagtagaggcatgtagaacaatggagtgacatctgagcaaagtggagaagctc 360
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cgtgataaagtagaggcgtgtagaacaatggagtgtcatctgagcaaagtggagaagctc 560
Query: 361 tgttgtgtgggaaggagtcttctcaggtcacactggttcccactggctgacagcactctc 420
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttgtgtgggaaggagacttgtcaggtcacactggttcccactggctgacagcactctc 620
Query: 421 atcttaccttcttacagctggcgttcccagagtttatagttcatgctgatgatcctatgg 480
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gtcttaccttcttacagctggtgttcccagagtttatggttcatgctgatgatcctatgg 680
Query: 481 cccaactagccctggttcatctttttttcactttgtcactgctttaaacaggcaggtcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccaactagccctggttcatctttttttcactttgtcactgctttaaacaggcaggtcaa 740
Query: 541 ca-gcttatcccgtgtcacatgaaagcatctagttcctgttggactcatttaggaatgct 599
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 caagcttatcccgtgtcacatgaaaacatctagttcctgttggactcatttaggaatgct 800
Query: 600 ctccctttggacataaaaggtgccgtgataaccagacttctgctggagctgta 652
| ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 801 c-ccctttggacataaaagatgtcgtgacaaccagacttctgctggagctgta 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
