BAC Information

Click to search

BAC

Clone NameMSMg01-324L03
Chromosome2 (Build37)
Map Location 80,858,753 - 80,859,310
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L03.T7 (MSMg01no324_l03.b1)MSMg01-324L03.TJ (MSMg01no324_l03.g1)
ACCAG442776AG442777
length777697
length of high quality
(start - end)
573 (45 - 617)---
definitionCHROMAT_FILE: MSMg01no324_l03.b1 PHD_FILE: MSMg01no324_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:04 2005CHROMAT_FILE: MSMg01no324_l03.g1 PHD_FILE: MSMg01no324_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAAATACGCGGAAT
TCCTTTATAAATTATCTTCTCTAAATCATCTCTCCACTGACAGTTATTTT
TATTTTACTCAAATATTGTTCTGCATGTACAGTAATAAGGTGGGCCTGAG
ACTCTCAACTCTGACAGGCTGGATTTGCTCCTATTTGGGGGATTCATCTT
CCTGCTTTAAAAGATCCTTCCTTCCTTTTCATGGGTATCAGAAAGGTCTT
CAAACCTTTGTTCTACTCAATGTATTGTTCCCTCAACAGAAGGCTAGCTG
TCATCAAATTGTACAGATAGGATTAGATTAATTGCCCATGTGTCCCCTCA
ACATCCTTTTTGCATTTAACCATGAAAAAAAATCTCTGCTCACAGCCCCG
TTCTTAGTAATTTGTACTGCACAATCTGCAGCCCAGAAGTGTAATCCTGT
GCCAGCAAAGTAGGCAATATTTGTGAACTTTTCGTGTCAATGGTCCAGAT
TCATCAAGAGCTTGCTGAATGTGAAACCCTGTACTCAGGACCCAGTAAAT
ATAATTCCTTCATAGAATTCATATGTACACTAGTGTTGTAAAGAAAAATT
TCAAAGGTGCTTCTAGAATATTAACGTGCAAATGGATAGCCTGTGCCTTT
TGATCTACAGCTGTGATTCTCAGCCAGGATGCATTATTCTGTGTATCTAA
AAGGTCTTATAAAAAGCTAATGTTTGGACCTCACCCATTTTCCTACTTTG
AATAATTTAAAGGCTCACGTTGAAAAA
CATACATGNTAGCCTGGGCCGCCTGCCTTCCAAAAAGGGANNTATANANG
ATTTCCCAATCTTCGGAANCCTTGGTAAGGTGACAAGTTTGACTACAGAA
AAAAAAAGAAAATAAAAAAAAGAAGACCTGNNNTGTTNTTCNNCNCAGGC
TGTGTATGTCCTGAATTCGGGTGGGNACCGAAANTTATTTCTTATTTCNC
NCNTTTGTTTCCCCTTTCCGAATCCGGGGAATAAATAAAAACCTCATTGG
GCTAAATCAGAAACCCTCTNNNATTTTAAACNNNNNNNNNNNNANACAAN
NCGGACCAAAAAACAAAAAGACCCNNAAGGGGNNAGGTTCCNNNNNNNNN
NNTTTTTTTTTNTTTTTTTNNNTTTTTTTTNNNNTTTTTTTTTTTCCCCT
TTTTTTTNNTTTTTTTTTTTTNTTNTGGGGAACAAACGCGGCCCCCCGTT
TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCCACCTTT
TTTNNNNAAGAAGTTNTTTTTTTTTTTGTTGGGGGGGGGGGGGGGGGAAA
AATACTTNNNNNNTTNNNTNNTTNNNNTTTTTTNTTTNTTTTTTTTTTTN
TTTATTTTTNTTTTTTATATAAAAAAAAAGTTCTGGGGGGNNNNNNNNNA
NAAAAAAAAAAAAGGGCGCTGGAGGTTNNTATAAAAAAAAAACCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l03.b1 MSMg01no324_l03.b1 CHROMAT_FILE:
MSMg01no324_l03.b1 PHD_FILE: MSMg01no324_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:04 2005
         (573 letters)



>mm_chr2_80858671_80859643
          Length = 973

 Score =  963 bits (498), Expect = 0.0
 Identities = 547/572 (95%), Gaps = 14/572 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcctttataaattatcttctctaaatcatctctccactgacagttatttttattt 61
           ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggaattcctttataaaacattttctctaaatcatctctccactgacagttatttttattt 581

                                                                       
Query: 62  tactcaaatattgttctgcatgtacagtaataaggtgggcctgagactctcaactctgac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tactcaaatattgttctgcatgtacagtaataaggtgggcctgagactctcaactctgac 521

                                                                       
Query: 122 aggctggatttgctcctatttgggggattcatcttcctgctttaaaagatccttccttcc 181
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 aggctggatttgctcctatttgggggatccatcttcctgctttaaaagatccttccttcc 461

                                                                       
Query: 182 ttttcatgggtatcagaaaggtcttcaaacctttgttctactcaatgtattgttccctca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttcatgggtatcagaaaggtcttcaaacctttgttctactcaatgtattgttccctca 401

                                                                       
Query: 242 acagaaggctagctgtcatcaaattgtacagataggattagattaattgcccatgtgtcc 301
           |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||
Sbjct: 400 acagaaggctagctgtcatcaaattgtacagataggaaaagagtaattgcccatgtgtcc 341

                                                                       
Query: 302 cctcaacatcctttttgcatttaaccatgaaaaaaaatctctgctcacagccccgttctt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cctcaacatcctttttgcatttaaccatgaaaaaaaatctctgctcacagccccgttctt 281

                                                                       
Query: 362 agtaatttgtactgcacaatctgcagcccagaagtgtaatcctgtgccagcaaagtaggc 421
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agtaatttgtactgcagaatctgcagcccagaagtgtaatcctgtgccagcaaagtaggc 221

                                                                       
Query: 422 aatatttgtgaacttttcgtgtcaatggtccagattcatcaagagcttgctgaatgtgaa 481
           |||||||||||||||||||              ||||||||||||||||||||||||| |
Sbjct: 220 aatatttgtgaacttttcg--------------attcatcaagagcttgctgaatgtgga 175

                                                                       
Query: 482 accctgtactcaggacccagtaaatataattccttcatagaattcatatgtacactagtg 541
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 174 accctggactcaggacccagtaaatataatcccttcatagaattcatatgtacactagtg 115

                                           
Query: 542 ttgtaaagaaaaatttcaaaggtgcttctaga 573
           ||||||||||||||||||||||||||||||||
Sbjct: 114 ttgtaaagaaaaatttcaaaggtgcttctaga 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)