BAC Information

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BAC

Clone NameMSMg01-324P20
Chromosome2 (Build37)
Map Location 127,327,797 - 127,526,011
singlet/doubletdoublet
Overlap geneKcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892
Upstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
Downstream geneMall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324P20.T7 (MSMg01no324_p20.b1)MSMg01-324P20.TJ (MSMg01no324_p20.g1)
ACCAG442990AG442991
length742750
length of high quality
(start - end)		645 (71 - 715)669 (82 - 750)
definitionCHROMAT_FILE: MSMg01no324_p20.b1 PHD_FILE: MSMg01no324_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:26 2005CHROMAT_FILE: MSMg01no324_p20.g1 PHD_FILE: MSMg01no324_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,327,797 - 127,328,440)(127,525,346 - 127,526,011)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCAGACAACATCACCTAGGGACAGGGCTACTAAGAGGCGAGAGGTGA
GAGGCGAGGTCAGCCTTCCCTGTGGAGGTCTGGAAGCTATAACACACACA
ACCACCCAGGCCTTGTGCCTGGTCAACAGAATGGGGAGAAATTACAATAG
GTTGACTTTGAAAACTCACCCTCTCTATCCTTGGTCACAAATGAGGACAC
TAACTTGTCTGACACATGGAAATAATCCTGCCTCAGTATTACAAAGTCAA
TTGCTTGCCCAGCCACCACTGTGGTTCTTTATAGACGCTGGTGGGGGTCC
CAAAGAGCATGCTGCTGTGTCCATTTGATGCATAAATAAACTGAGGGACT
TGCTCAGTGTCCAGCATTGGCACAGAACAGAGCCAACCCAGGAGCCCGCT
CAACAAGGTGAAAGCAGAAAGCCGTGCATGGAGTGACTCCTTTCACACAC
ACCCGATACAATCATCTCTATGACCTCATTTTTATATCCATTTCATCTTA
CAGATGAAGAAATGGATGCGGTGAGAGGCTGGAGCATGGCCTGGCAGATG
GGGCTCTGTTTACAAACTGTGCAAATGAAGCCATCCAGTCTGCCCTCAGA
ATCACCTGACTTGCCAGGGAGAACTGGGTGTTGCTATGACTGGTACCCAG
ATGCACATTTCTAANAGGCTCCTTCTTTTCTGTGGTAGAGAN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTGAGTCCAGCCAAT
CATGCCTTGTCTGCCAAGGAAGCCAGGGCTCCTTAGCAGACAAGATATCC
CCAGATACAGCTCTCAATAGCTGTCCCTGACTCCTCTTCCAGTGCAACCA
CGAAGAATACGCTTGTAATTGTAAAGAATTACACTTCACAGTAAGTTTCT
TGCCAGCACTGTGAAGACTCGAAGTTTAACTCCAGTGTTTGAGGAGATTG
TTAAGTTCCTTGTAAGTTCAAGAGAACTTTAATGTAAAATGGTGAGCTTG
AAGAGCAGAACTCTGGTTTATCTATGGACCTATCATCTGTCCTTCAGAGA
CTGGGTGACCAGCCAATGATAACGCTGAGGAAAACTGTAAAAGCCCTGGG
AAATGTTCATGACCCAGGAGTAGAGCACTAGCCATCAGGTGTGCTGAGAA
CCACATGCAAGAGGAACAGCGTAATCTGGATTAGATCTACTCTGTCCAGA
GACACAAGACTTATGGTTTTCGTAAGTGACGAGGAGGAGGGACAAGCCCT
CAGAGAGTCACATTTGCATACATGGATCAGCCTGGGGTCAGAAACCCGGT
GCATGAAGATTTCTTCATTGAGTTGGGACCATACTCCTGGACAGGGATCA
ACAGGAACTTGTTATCAGGCCTAGGGTCCTCACCTGCAAAGGCAAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_p20.b1 MSMg01no324_p20.b1 CHROMAT_FILE:
MSMg01no324_p20.b1 PHD_FILE: MSMg01no324_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:26 2005
         (645 letters)



>mm_chr2_127327597_127328641
          Length = 1045

 Score = 1183 bits (612), Expect = 0.0
 Identities = 636/644 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggacagggctactaagaggcgagaggtgagaggcgaggtcagccttccctgtggaggtc 60
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 gggacagggctaccaagaggcgagagatgagaggcgaggtcagccttccctgtggaggtc 260

                                                                       
Query: 61  tggaagctataacacacacaaccacccaggccttgtgcctggtcaacagaatggggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagctataacacacacaaccacccaggccttgtgcctggtcaacagaatggggagaa 320

                                                                       
Query: 121 attacaataggttgactttgaaaactcaccctctctatccttggtcacaaatgaggacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacaataggttgactttgaaaactcaccctctctatccttggtcacaaatgaggacac 380

                                                                       
Query: 181 taacttgtctgacacatggaaataatcctgcctcagtattacaaagtcaattgcttgccc 240
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 381 taacttgtctgacacatggaagtaatcccgcctcagtattacaaagtcaattgcttgccc 440

                                                                       
Query: 241 agccaccactgtggttctttatagacgctggtgggggtcccaaagagcatgctgctgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaccactgtggttctttatagacgctggtgggggtcccaaagagcatgctgctgtgt 500

                                                                       
Query: 301 ccatttgatgcataaataaactgagggacttgctcagtgtccagcattggcacagaacag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 501 ccatttgatgcataaataaactgagggacttgctcagtgtccagcattggtataaaacag 560

                                                                       
Query: 361 agccaacccaggagcccgctcaacaaggtgaaagcagaaagccgtgcatggagtgactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaacccaggagcccgctcaacaaggtgaaagcagaaagccgtgcatggagtgactcc 620

                                                                       
Query: 421 tttcacacacacccgatacaatcatctctatgacctcatttttatatccatttcatctta 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcacacacacccgatacgatcatctctatgacctcatttttatatccatttcatctta 680

                                                                       
Query: 481 cagatgaagaaatggatgcggtgagaggctggagcatggcctggcagatggggctctgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagatgaagaaatggatgcggtgagaggctggagcatggcctggcagatggggctctgtt 740

                                                                       
Query: 541 tacaaactgtgcaaatgaagccatccagtctgccctcagaatcacctgacttgccaggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacaaactgtgcaaatgaagccatccagtctgccctcagaatcacctgacttgccaggga 800

                                                       
Query: 601 gaactgggtgttgctatgactggtacccagatgcacatttctaa 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaactgggtgttgctatgactggtacccagatgcacatttctaa 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_p20.g1 MSMg01no324_p20.g1 CHROMAT_FILE:
MSMg01no324_p20.g1 PHD_FILE: MSMg01no324_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:26 2005
         (669 letters)



>mm_chr2_127525146_127526211
          Length = 1066

 Score = 1263 bits (653), Expect = 0.0
 Identities = 664/669 (99%), Gaps = 3/669 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagttgagtccagccaatcatgccttgtctgccaaggaagccagggctccttagcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcagttgagtccagccaatcatgccttgtctgccaaggaagccagggctccttagcagac 807

                                                                       
Query: 61  aagatatccccagatacagctctcaatagctgtccctgactcctcttccagtgcaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aagatatccccagatacagctctcaatagctgtccctgactcctcttccagtgcaaccac 747

                                                                       
Query: 121 gaagaatacgcttgtaattgtaaagaattacacttcacagtaagtttcttgccagcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaagaatacgcttgtaattgtaaagaattacacttcacagtaagtttcttgccagcactg 687

                                                                       
Query: 181 tgaagactcgaagtttaactccagtgtttgaggagattgttaagttccttgtaagttcaa 240
           ||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgaagacgc---gtttaactccagtgtttgaggagattgttaagttccttgtaagttcaa 630

                                                                       
Query: 241 gagaactttaatgtaaaatggtgagcttgaagagcagaactctggtttatctatggacct 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 629 gagaactttaatgtaaaatggtgagcttgaagagaagaactctggtttatctatggacct 570

                                                                       
Query: 301 atcatctgtccttcagagactgggtgaccagccaatgataacgctgaggaaaactgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atcatctgtccttcagagactgggtgaccagccaatgataacgctgaggaaaactgtaaa 510

                                                                       
Query: 361 agccctgggaaatgttcatgacccaggagtagagcactagccatcaggtgtgctgagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agccctgggaaatgttcatgacccaggagtagagcactagccatcaggtgtgctgagaac 450

                                                                       
Query: 421 cacatgcaagaggaacagcgtaatctggattagatctactctgtccagagacacaagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cacatgcaagaggaacagcgtaatctggattagatctactctgtccagagacacaagact 390

                                                                       
Query: 481 tatggttttcgtaagtgacgaggaggagggacaagccctcagagagtcacatttgcatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatggttttcgtaagtgacgaggaggagggacaagccctcagagagtcacatttgcatac 330

                                                                       
Query: 541 atggatcagcctggggtcagaaacccggtgcatgaagatttcttcattgagttgggacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atggatcagcctggggtcagaaacccggtgcatgaagatttcttcattgagttgggacca 270

                                                                       
Query: 601 tactcctggacagggatcaacaggaacttgttatcaggcctagggtcctcacctgcaaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tactcctggacagggatcaacaggaacttgttatcaggcctagggtcctcacctgcaaag 210

                    
Query: 661 gcaaaaaca 669
           |||||||||
Sbjct: 209 gcaaaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1066
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1056
Effective search space:   695904
Effective search space used:   695904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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