Query= MSMg01no325_a24.b1 MSMg01no325_a24.b1 CHROMAT_FILE:
MSMg01no325_a24.b1 PHD_FILE: MSMg01no325_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:31 2005
(374 letters)
>mm_chr2_162839911_162840684
Length = 774
Score = 642 bits (332), Expect = 0.0
Identities = 344/348 (98%)
Strand = Plus / Minus
Query: 3 gaattcttggccctattaccctaagggaggagtagacctgtccaaaggttacaaggtaga 62
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaattcttggccctaagagcctaagggaggagtagacctgtccaaaggttacaaggtaga 491
Query: 63 gccctaggtcaaatatagattaccattccagcccgttagtggtgtggccttcaagcctca 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtcctaggtcaaatatagattaccattccagcccgttagtggtgtggccttcaagcctca 431
Query: 123 aagtttctctgaccctgtctcttccgttgacaaaaggggaagtgatcattcccttagggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagtttctctgaccctgtctcttccgttgacaaaaggggaagtgatcattcccttagggt 371
Query: 183 cattggaagaagacccctaaccgacaggaacatcagctctacgactcgcccaggagacat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cattggaagaagacccctaaccgacaggaacatcagctctacgactcgcccaggagacat 311
Query: 243 gctctgaggctgactttggacagctatgtaaaaagggagtgtgttaaaagactgcaatct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gctctgaggctgactttggacagctatgtaaaaagggagtgtgttaaaagactgcaatct 251
Query: 303 tcaaaggaaagctcgaggcttctagggactggctgctacagtctgcac 350
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcaaaggaaagctcgaggcttctagggactggctgctacagtctgcac 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_a24.g1 MSMg01no325_a24.g1 CHROMAT_FILE:
MSMg01no325_a24.g1 PHD_FILE: MSMg01no325_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:31 2005
(562 letters)
>mm_chr2_162696707_162697668
Length = 962
Score = 986 bits (510), Expect = 0.0
Identities = 551/566 (97%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 1 caataggaatccagggttcaggtgaagagacatattgaccttagcagagtttgatcaggt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataggaatccagggttcacgtgaagagacatattgaccttagcagagtttgatcaggt 260
Query: 61 gatgtcagaacataaggaggcaaggctttccaatattatatcaacatcaagaaggctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gatgtcagaacataaggaggcaaggctttccaatattatatcaacatcaggaaggctaat 320
Query: 121 taggaactctttaccatatgtgaaaaatgttgagaaaccccgaaggttgttatcttagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaactctttaccatatgtgaaaaatgttgagaaaccccgaaggttgttatcttagtt 380
Query: 181 agggttactatcgtaacggaacaccatgcaaccggtgttccatcaacttgaggaagaata 240
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agggttactatcgtaatggaacaccatgcaaccagtgttccatcaacttgaggaagaata 440
Query: 241 catttatcttgcttactttttcctatcacagctcatcaccaatgaagtcaggcaggcact 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgatcttgcttactttttcctatcacagctcatcaccaatgaagtcaggcaggcact 500
Query: 301 caaacagggcagaaacctagaagcagaagccatgaatgagtattgcatgcccacttgctc 360
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 501 caaacagggcagaaacctagaggcagaagccatgaatgagtattgcatgttgacttgctc 560
Query: 361 ctaatggcttggtcagggttgttcttaatggcttgcctgggttcttatagaacccagaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ctaatggcttggtcagggttgttcttaatggcttgcctgggttcttatagaacccagcac 620
Query: 421 caccagctcagggtagccccacccacaatggactgccccccccc-atcaatcaatcacta 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 caccagctcagggtagccccacccacaatggactgccccccccccatcaatcaatcacta 680
Query: 480 attaagaaaacgaccttatg---atcttatggaggcattttctcagttgatgattctaac 536
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 681 attaagaaaacgaccttatggagatcttatggaggcattttctcagttgatgattcttac 740
Query: 537 cctcccctctgattattctaacccgt 562
||||||||||||||||||||||||||
Sbjct: 741 cctcccctctgattattctaacccgt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
