BAC Information

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BAC

Clone NameMSMg01-325E19
Chromosome2 (Build37)
Map Location 126,453,890 - 126,616,766
singlet/doubletdoublet
Overlap geneGabpb1, Usp8, LOC100043714, Usp50
Upstream geneShc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc
Downstream geneTrpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325E19.T7 (MSMg01no325_e19.b1)MSMg01-325E19.TJ (MSMg01no325_e19.g1)
ACCAG443223AG443224
length748741
length of high quality
(start - end)		657 (73 - 729)659 (68 - 726)
definitionCHROMAT_FILE: MSMg01no325_e19.b1 PHD_FILE: MSMg01no325_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:47 2005CHROMAT_FILE: MSMg01no325_e19.g1 PHD_FILE: MSMg01no325_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,616,110 - 126,616,766)(126,453,890 - 126,454,548)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTCACTGTGCTCAGTGGCAAGCACCTTTACCCATTATGCCATG
TCTTTTGCTGTTTTTAATCTCCAGCTAATCAGAAAAATGATTCATGTTTA
ATTTTATATTGTTTTTACAAAATAATTTAGAACTTCTTGAGGCTGGAGTT
AAGAACACTGGTTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAGCACCA
ACATGGCAGCTCACAACTGTTCATAACTCAATTCTAGGGGATCCAACACC
CTCACACATGCAGGTAAAATGTCAATCAGTACAATAAAATAAATATTTTT
TAAATGTCACATATTTTTAAACACTTTATGCACTTAAGCCATGTAATAGT
CCTGTAAAATATGTTAGTCCATTCCACAAGTGAAAGAAATCAAGATTACT
GTAGATACTTTTAGTATGTAGCAATATTAGGATTCAGACCCAGGCATTCA
AGTTTTCCCGAGCTTTTAAGCAGTGTTCTGTATTGACTGTCCAGCAAAGT
GACAATTGATGCTTGCTTTTAATTGTCAACTTTGAGACAACTTAGAATCA
CTTGGAAAGAGTTTCAGTTGAAGAATTAATCTAGATCAGGTTGACCTCTG
GGATTGTGTGGGATTGTCTTAATTTGTGTGGGAAGTTCCAACCCAGTCCC
TGGTTTGGGGTTCTGGGCTGTGCAAGAGTGGGAGGGGCTGCCCGAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAAGTTCAACACTAGCTATGTCAACACAGTGA
GAGATTTCTCTCGGTCGAAACCGAGGGCAGTGTCAGGGGCTTACTTATGG
CCCCAGAACTACGAAGGCTGAGGTGGCAAGGTCACTAGAATTCATGACTT
GGAGACTTGACTGTAACAGCGAGGCTGCATCTCAAAATGAATACATCTAG
TGTCAAATTTAGTGAAAAACTGGAAGGCATTCTCTTAGTTTTGTTTTTTA
AAATGGTTGTCATAGAGCAGAGGTTCTCAACCTGTGGGTCACAACCACTG
GAGGGTCATATATTCTTCCCCAGGGGTCCCAGATCCGACATCCTGAATAT
CAGAAATTTACATTACCGCTTATATCCGTTCTGAAGTAGCAACAAAAACA
TTTTAATACAGTTCCTCACTACAACATGCACTGGACTAGAGTTGCAGCCT
CAGGGAGGCTGAGGAGCACTGCTATAGAGGCTCCTTGTGGTCCCCAGAAA
GGCAAGTGAGAGAGGCTGGGACACGGACCCTTTCTTACCCTCACTAACTC
CTGTAAAGTTACCCCAGGCACGAACCAGCACATTTCCAGGCAGCCACTCT
GGGGCTTTTCAAGGCATGAGGAGTCTAATTGGTTTCATATGGCAGAACGT
GTCTCAGATTGTATGTGCGACAGGATTTGAGCCAGAGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_e19.b1 MSMg01no325_e19.b1 CHROMAT_FILE:
MSMg01no325_e19.b1 PHD_FILE: MSMg01no325_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:47 2005
         (657 letters)



>mm_chr2_126615895_126616951
          Length = 1057

 Score = 1247 bits (645), Expect = 0.0
 Identities = 654/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaagcacctttacccattatgccatgtcttttgctgtttttaatctccagctaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ggcaagcacctttacccattatgccatgtcttttgctgtttttaatctccagctaatcag 813

                                                                       
Query: 61  aaaaatgattcatgtttaattttatattgtttttacaaaataatttagaacttcttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aaaaatgattcatgtttaattttatattgtttttacaaaataatttagaacttcttgagg 753

                                                                       
Query: 121 ctggagttaagaacactggttgctcttccagaggacccaggttcaattcccagcaccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctggagttaagaacactggttgctcttccagaggacccaggttcaattcccagcaccaac 693

                                                                       
Query: 181 atggcagctcacaactgttcataactcaattctaggggatccaacaccctcacacatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atggcagctcacaactgttcataactcaattctaggggatccaacaccctcacacatgca 633

                                                                       
Query: 241 ggtaaaatgtcaatcagtacaataaaataaatattttttaaatgtcacatatttttaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggtaaaatgtcaatcagtacaataaaataaatattttttaaatgtcacatatttttaaac 573

                                                                       
Query: 301 actttatgcacttaagccatgtaatagtcctgtaaaatatgttagtccattccacaagtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct: 572 actttatgcacttaagccatgtaatagtcctgtaaaatatgttagtccattttataagtg 513

                                                                       
Query: 361 aaagaaatcaagattactgtagatacttttagtatgtagcaatattaggattcagaccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaagaaatcaagattactgtagatacttttagtatgtagcaatattaggattcagaccca 453

                                                                       
Query: 421 ggcattcaagttttcccgagcttttaagcagtgttctgtattgactgtccagcaaagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggcattcaagttttcccgagcttttaagcagtgttctgtattgactgtccagcaaagtga 393

                                                                       
Query: 481 caattgatgcttgcttttaattgtcaactttgagacaacttagaatcacttggaaagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caattgatgcttgcttttaattgtcaactttgagacaacttagaatcacttggaaagagt 333

                                                                       
Query: 541 ttcagttgaagaattaatctagatcaggttgacctctgggattgtgtgggattgtcttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttcagttgaagaattaatctagatcaggttgacctctgggattgtgtgggattgtcttaa 273

                                                                    
Query: 601 tttgtgtgggaagttccaacccagtccctggtttggggttctgggctgtgcaagagt 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttgtgtgggaagttccaacccagtccctggtttggggttctgggctgtgcaagagt 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_e19.g1 MSMg01no325_e19.g1 CHROMAT_FILE:
MSMg01no325_e19.g1 PHD_FILE: MSMg01no325_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:47 2005
         (659 letters)



>mm_chr2_126453690_126454748
          Length = 1059

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagttcaacactagctatgtcaacacagtgagagatttctctcggtcgaaaccgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagttcaacactagctatgtcaacacagtgagagatttctctcggtcgaaaccgaggg 260

                                                                       
Query: 61  cagtgtcaggggcttacttatggccccagaactacgaaggctgaggtggcaaggtcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgtcaggggcttacttatggccccagaactacgaaggctgaggtggcaaggtcacta 320

                                                                       
Query: 121 gaattcatgacttggagacttgactgtaacagcgaggctgcatctcaaaatgaatacatc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcatgacttggagactagactgtaacagcgaggctgcatctcaaaatgaatacatc 380

                                                                       
Query: 181 tagtgtcaaatttagtgaaaaactggaaggcattctcttagttttgttttttaaaatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtgtcaaatttagtgaaaaactggaaggcattctcttagttttgttttttaaaatggt 440

                                                                       
Query: 241 tgtcatagagcagaggttctcaacctgtgggtcacaaccactggagggtcatatattctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tgtcatagagcagaggttctcaacctgtgggtcacaaccactggagggtcatatactctt 500

                                                                       
Query: 301 ccccaggggtcccagatccgacatcctgaatatcagaaatttacattaccgcttatatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 501 ccccaggggtcccagatccgacatcctgaatatcagaaatttacattacagtttatatcc 560

                                                                       
Query: 361 gttctgaagtagcaacaaaaacattttaatacagttcctcactacaacatgcactggact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctgaagtagcaacaaaaacattttaatacagttcctcactacaacatgcactggact 620

                                                                       
Query: 421 agagttgcagcctcagggaggctgaggagcactgctatagaggctccttgtggtccccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagttgcagcctcagggaggctgaggagcactgctatagaggctccttgtggtccccag 680

                                                                       
Query: 481 aaaggcaagtgagagaggctgggacacggaccctttcttaccctcactaactcctgtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggcaagtgagagaggctgggacacggaccctttcttaccctcactaactcctgtaaa 740

                                                                       
Query: 541 gttaccccaggcacgaaccagcacatttccaggcagccactctggggcttttcaaggcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttaccccaggcacgaaccagcacatttccaggcagccactctggggcttttcaaggcat 800

                                                                      
Query: 601 gaggagtctaattggtttcatatggcagaacgtgtctcagattgtatgtgcgacaggat 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaggagtctaattggtttcatatggcagaacgtgtctcagattgtatgtgcgacaggat 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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