Query= MSMg01no325_g03.b1 MSMg01no325_g03.b1 CHROMAT_FILE:
MSMg01no325_g03.b1 PHD_FILE: MSMg01no325_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:53 2005
(531 letters)
>mm_chr2_137702215_137703145
Length = 931
Score = 926 bits (479), Expect = 0.0
Identities = 518/531 (97%)
Strand = Plus / Minus
Query: 1 cagtaatcttatcacatccactactcttaggaaagaatattgatcatatttacaaatcaa 60
||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 731 cagtaatcttatctcacccactactcttaggaaagaatattgatcgtatttacaaatcaa 672
Query: 61 caggcccttctagcatcacttatagtgactcaaagacattcaaatgccattaagctacat 120
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 671 caggcccttctagcatcacttatagggacccaaagacattcaaatgccattaagctacat 612
Query: 121 aataagggtcaacagatcccttgtcagccttctttcctggacattttattcggcaaagcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 611 aataagggtcaacagatcccttgtcagccttctttcctggacattttattcgccaaagcc 552
Query: 181 acttctcagactatgccaaaaactaagtacatgttgtctcttcttctcagaccgtggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acttctcagactatgccaaaaactaagtacatgttgtctcttcttctcagaccgtggcta 492
Query: 241 gaaatttctttgtcaaagatgactcacaccatacagagctggaaggattctttttattgc 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaaatttcaatggcaaagatgactcacaccatacagagctggaaggattctttttattgt 432
Query: 301 ttctcaatccattgtctcacagctgaatgacacagaatgtaaaatccaccacaaatatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 ttctcaatccattgtctcacagctgaatgacacagaatgtaaaatccaccagaaatatca 372
Query: 361 gcagtgggcaacgtgcaagggcatttccaagtcttcaggaaggatttaatcaatgtttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcagtgggcaacgtgcaagggcatttccaagtcttcaggaaggatttaatcaatgtttct 312
Query: 421 cacatctggagttgtttctatctcttgggactcataaaatttctatcttgaagacacacg 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacatctggagttgtttgtatctcttgggactcataaaatttctatcttgaagacacacg 252
Query: 481 gcaaggtcttcttattctttgagaacaacagcctgcttacttccttcatgg 531
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtaaggtcttcttattctttgagaacaacagcctgcttacttccttcatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_g03.g1 MSMg01no325_g03.g1 CHROMAT_FILE:
MSMg01no325_g03.g1 PHD_FILE: MSMg01no325_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:53 2005
(617 letters)
>mm_chr2_137527852_137528869
Length = 1018
Score = 1050 bits (543), Expect = 0.0
Identities = 600/619 (96%), Gaps = 3/619 (0%)
Strand = Plus / Plus
Query: 1 tttaagctcagcttaaaatttaagatattgcaaaatatcgtagatttagtagaaatttta 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 201 tttaagctcagcttaaaatttaagatattgcaaagtatcgtagatttagtagaactttta 260
Query: 61 tcttgagttgtaatttttt-ctgataaccccaatattcttattagaagcaaatggaacag 119
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 261 tcttgagttgtaattttttcctgataaccccgatgttcttattagaagcaaatggaacag 320
Query: 120 agctcagtgttttaaatgggaatagatcaatagtactgaagaccattttcaaaagaaaag 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 agctcagtgttttaaatgggaatagatcagtagtactgaagaccattttcaaaagaaaag 380
Query: 180 tggggcctcagtcagagataaaccagtatggaagcgtcatctacattctgcccacacatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggggcctcagtcagagataaaccagtatggaagcgtcatctacattctgcccacacatc 440
Query: 240 ttcaaagccttttacaggatcctgcagcacgcagactcatccaagctccgcactcacctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaagccttttacaggatcctgcagcacgcagactcatccaagctccgcactcacctc 500
Query: 300 taagatcaccccttgcctcagctcttttagttttcttatctatttgacctcgaaatagtt 359
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 501 taagatcaccccttgcctcagctcttttagttttcttatctatttgatcttgaaatactt 560
Query: 360 tgctttggctgaaataatttgaattgtaaca-tgccatcatgaacactatccgggctcat 418
|||||||||||| |||||||||||||||| | | |||||||||||||||||| |||||||
Sbjct: 561 tgctttggctgagataatttgaattgtaatact-ccatcatgaacactatcctggctcat 619
Query: 419 agtcctgccttatcccaagcgcaactttaacttagcttttgcaatatttctaaagttgtt 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtcctgccttatcccaagagcaactttaacttagcttttgcaatatttctaaagttgtt 679
Query: 479 ccatcattgaaaattagaaatgtgcgtaataatttaggtcctcaactttcttaaataatt 538
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 ccatcattgaaaattagaaatttgcgtaatagtttaggtcctcaactttcttaaataatt 739
Query: 539 tacccaatgagaagaattacctaggtttctgtcatgtatcttaccaaatattttctcaag 598
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 740 tacccaatgagaagaattacctaggtttctgtcatttatcttaccaaatattctctcaag 799
Query: 599 atatcttataccttagttc 617
|||||||||||||||||||
Sbjct: 800 atatcttataccttagttc 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
