Query= MSMg01no325_o22.b1 MSMg01no325_o22.b1 CHROMAT_FILE:
MSMg01no325_o22.b1 PHD_FILE: MSMg01no325_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:32 2005
(249 letters)
>mm_chr2_143868958_143869605
Length = 648
Score = 397 bits (205), Expect = e-115
Identities = 238/253 (94%), Gaps = 9/253 (3%)
Strand = Plus / Plus
Query: 1 cccattggggctctcctgaagccagacacaaccagcctcctgatagttctttatctcagg 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cccattggggctctcctgaagccagacacaaccagcctcctgatagtt----atctcagg 256
Query: 61 agggtgtttgttttcagtct----gacccagaaagagattctggataagtctttgcatct 116
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 agggtctttgttttcagtcttgatgacccagaaagagattctggataagtctttgcatct 316
Query: 117 aaacctgcagaggtgttagctgttttcttaggcttctgggcccttgagaatctaacccat 176
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 aaacctgcagaggtgttagctgttttcttaggcttctggccccttgagaatctaacccat 376
Query: 177 agccagttcccagacttcccctagttcagctggtcagaggtgggctataagctcagagct 236
||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct: 377 ggccagttcccagacttctactagttcagctggtcaaag-tgggctataagctcagagct 435
Query: 237 ggggaacctccag 249
|||||||||||||
Sbjct: 436 ggggaacctccag 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no325_o22.g1 MSMg01no325_o22.g1 CHROMAT_FILE:
MSMg01no325_o22.g1 PHD_FILE: MSMg01no325_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:32 2005
(543 letters)
>mm_chr2_144036084_144037026
Length = 943
Score = 965 bits (499), Expect = 0.0
Identities = 532/543 (97%)
Strand = Plus / Minus
Query: 1 ttttggaatagcacggggttacctctaccacattcttgtaaaagcagtactttcaggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttttggaatagcacggggttacctctaccacattcttgtaaaagcagtactttcaggctc 684
Query: 61 tctcagcaggagacatggagagatgaatcatgtaatggtttgaatatgagagggcacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctcagcaggagacatggagagatgaatcatgtaatggtttgaatatgagagggcacctt 624
Query: 121 aagctcttgttcccagatagtggtcacaaattcaagattcggggcctagctggaggagct 180
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 aagctcttgttcctagatagtggtcacaaattcaagatgcggggcctagctggaggagct 564
Query: 181 ggctgatgagggcaggtcctacgagcatatcttgtccttaaccccctcctatctgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggctgatgagggcaggtcctacgagcatatcttgtccttaaccccctcctatctgtgtgt 504
Query: 241 ctctgtgctgactgattggcctctgtgagcagctttgctcctcagagtgccctgcttcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 ctctgtgctgactgattggcctctgtgagcagctttgctcctcagagtgccctacttcac 444
Query: 301 tactggcccacagcaatggagcaagctggccctggactgacagcaggacccacacacagt 360
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct: 443 tactggcccacagcgatggagcaagctggccctggactgacagcaggagccaaagactgt 384
Query: 361 gcgggagaagaacatctggacatctggataggacaggttttttttggggggggtgggggg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 gcgggagaagaacatctggacatctggataggacaggttttttttgggggggatgggggg 324
Query: 421 ctcagggccaggatgcgaaacctggtcagtatgttttgagaaatcctaattgtaacctca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcagggccaggatgcgaaacctggtcagtatgttttgagaaatcctaattgtaacctcc 264
Query: 481 agttttcctctaccgaagacaaataaagaagactggtcatttctggaggattggaggatg 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 agttttcctctaccgaagacaaataaagaagactggtcgtttctggaggattggaggatg 204
Query: 541 acc 543
|||
Sbjct: 203 acc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
