BAC Information

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BAC

Clone NameMSMg01-326H03
Chromosome2 (Build37)
Map Location 38,640,768 - 38,641,035
singlet/doubletsinglet
Overlap geneNr6a1
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1
Downstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H03.T7 (MSMg01no326_h03.b1)MSMg01-326H03.TJ (MSMg01no326_h03.g1)
ACCAG444069AG444070
length6841,299
length of high quality
(start - end)
273 (16 - 288)---
definitionCHROMAT_FILE: MSMg01no326_h03.b1 PHD_FILE: MSMg01no326_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:09 2005CHROMAT_FILE: MSMg01no326_h03.g1 PHD_FILE: MSMg01no326_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTCCAAGAGGATCCGCGGAATTCAGTTCTATCCGACCTTCTCAGTG
GAACATGCTTACCCCACCCCACTCTCACCCTTTGTGTGGTGCTGGGGATC
AAAGACAAGGCCTTTCATATAGGAGCGTTCCCTTCTGATGCTTGTCTGCT
GATACATCAATGGACAGCTGAGTGTTTGACCAGGTGTCATTTGCATGTGA
CCCAGATTTCCTGCTTCTGCAAACCCTTTCTTACTCAGTGTTCAGGAATC
AGGAAGGCTGTAGCAAGGTGCTTACTTAAGATCTTTGGTACTTGGCGAAT
GAAGCAAGAATCCTACTTTAAAAGATGTAGCCTTCCTTCGACTGGGGTCA
GGAATTCTAACCTTTGGGTTTTCAAAAGGATTGTGAACCCCTACTTTCCT
TTTCCCACATTCTTTCAAGTATGTATTATCTTGTATCCACCGGTCCAGAG
ACTGAAGAAAGGTAAGGTGACCCTGCCCAGAGGGCTTAACCAAAACAGTT
TGCCTGCCCTTATTTATTATCACTACTAAAAACTGAGAACTCCAACTCCT
ATCTCAAATTATCACACCTTTTTTTGTTTGCCCTGATTTGTCTTTCCTAA
ATTGCCACACCTTTTACTTACCACTAAATCGCCCCAACTCCATAGTTCTT
TATACTTACTGTATTTTATTGACTTATGCGTAAA
TCCGCTCGCCTCTTTGTGGCCTCCACCCTGTNGNGNGATGACAACGTGTA
AAGGACATGTGCAAAGGAAAATGGCAAATTGTAGATACCGCGGCCCGGGG
TGGTGTATTTTATCCGCCCTTTGTGCGCCACTTGCTGAAAATTGAACGCT
GTGCTCTTTTTTCGTGTTAGTACACTGATACAACTCCTTTTCCTAATGCG
CCAAACACGCAAATGACAGAGCACACCAGACCCCCCATCCGTAAAAGTAT
CTCCCCGTCCCCACACGTTATTATAACTAACAGGCCAAGAAACTTCTATC
CGCATACAGTACACTTATTACACTATAACAATCGCGTTATCTATAATTAC
CGTACGAAATCGCAACACTCAAACGAGAACAGAGAAGAAGCACACCGCGT
GTGTGTGTATCACGATCGGCACCATCTTAGTTTATCAGACGCGGGGGGCG
GGGGGTGTGCCCGTTCTCCGGTCGCTATCCGTTGTCTCGGTGTGATGGTG
TTTTTCGCGCCCCCGACATCGTAAATCATCACCTTCTCCCCCTCCCCCTC
CACAATATTTAACATCTTATTTATATTTATTGTTTCCCCGCAAGCCGCAA
GTTTATAAAGTCTCTTTTCACCAATAGAATTGCGCCAATACCCCCTCTAT
TGAGGTTTATCGTCTCACNCTCTGATAACAGAACCATATTNNNCNNNNNC
GGCACTACTGTGCCATTGGATTTGTTGAATAAAGAACACCTATGATAGAA
AAGGGCCCCGGTNCCCNTNGGGCTTTTAAGCTTNTTNGAGGGCCCNNTGT
TTTTTAGGGGGNTCGGTTCACCAAACCTGTATTTAAAGGGGTATTTGCTG
TTATCCTTAGGCCAACGAAATGGAGTTTTTCCCACAATTCTTGTATCTTC
ACGCCGCAGGGCAGCCNAACCCAGATTGTAGTAGNAGGCCTTTTCACAGG
GCCTATGTATTGCATAGACCTTTCATCTAAACTACCACTAGTAGTGTGTT
CTGCCATGTTCCATATCCTCTTGGGAGCCACGCTTTCTCTTATCGCACTT
CACATTTTNTGTNTTACGNGCAAGNCTCTAGCCGGACGAAAATNTATCAC
GTTATATAACAACAATAGGTGCCACACCAATAATGAAATACGTNCCGGAC
GCATGAAGAGTGGTGATTTGACTATCTCTTGAAGACAGCNCTGGGTAACT
NATAAGAGAGTGCCCCGCACCCTCCCCCCCTACCATGTATTATACGGAGC
GCGATTTCTTTCTTTTCGTAGGCGAACCGCAATATTGTTATAGAGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h03.b1 MSMg01no326_h03.b1 CHROMAT_FILE:
MSMg01no326_h03.b1 PHD_FILE: MSMg01no326_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:09 2005
         (273 letters)



>mm_chr2_38640563_38641235
          Length = 673

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcagttctatccgaccttctcagtggaacatgcttaccccaccccactctcaccc 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaattcagttctattcgaccttctcagtggaacatgcttaccccaccccactctcaccc 414

                                                                       
Query: 66  tttgtgtggtgctggggatcaaagacaaggcctttcatataggagcgttcccttctgatg 125
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 413 tttgtgtggtgctggggatcaaagtcaaggcctttcatataggagcgttcccttctgatg 354

                                                                       
Query: 126 cttgtctgctgatacatcaatggacagctgagtgtttgaccaggtgtcatttgcatgtga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttgtctgctgatacatcaatggacagctgagtgtttgaccaggtgtcatttgcatgtga 294

                                                                       
Query: 186 cccagatttcctgcttctgcaaaccctttcttactcagtgttcaggaatcaggaaggctg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cccagatttcctgcttctgcaaaccctttcttactcagtgttcaggaatcaggaaggctg 234

                                       
Query: 246 tagcaaggtgcttacttaagatctttgg 273
           ||||||||||||||||||||||||||||
Sbjct: 233 tagcaaggtgcttacttaagatctttgg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)