BAC Information

Click to search

BAC

Clone NameMSMg01-326H21
Chromosome2 (Build37)
Map Location 7,108,443 - 7,108,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H21.T7 (MSMg01no326_h21.b1)MSMg01-326H21.TJ (MSMg01no326_h21.g1)
ACCAG444102AG444103
length553706
length of high quality
(start - end)
30 (70 - 99)252 (405 - 656)
definitionCHROMAT_FILE: MSMg01no326_h21.b1 PHD_FILE: MSMg01no326_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:12 2005CHROMAT_FILE: MSMg01no326_h21.g1 PHD_FILE: MSMg01no326_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTTCGGCGCTATCACTCCTATTCGAAGGATCNCGGAATCTTCTTGT
CGACCAGGTAATGACATCTCAGGAGTGGAAGGCTCGACCCAAAGTCACCT
GGTCCNANNANTTTAAATTTTTTTTTAAAAATAAATTTTTGGGGGTCCCC
CCCTTTGTGCGGGANAACACCCTGCAGAATAAGAAAAGGGACCCCTGAAG
GGAAAAAGCCCTTGGGAGAACCAGACCGAAGGGAAGAGTGTCCGTTCTAT
ACTGCCTGCCAAGAAGGCTAGTTCAGAGACTGCCTCTACTTGTCTTTCCC
CCTAAACGGGGTTCCCCCCCGTGGGTCCGGCCCCTTTAGAGGGGCTAAAA
CCCTTTCCCCGGGGTCTCCTTAATATTGTGGGAAACCCCAATTTTTTATT
TCGTTTTCCCCAGCGGGGAAAATTTCTTTTTTGGGGGGGGTTGTTTCCCC
CCCCTCGGTGGGGGGATCCCCCCCCTTCGCGACCCTCCTTTAGGGGTGGT
GCTCCCTAAAACCCGGCAAACACCCCCCTCCCCCCTCTTTTACCCCGCCC
CTC
TGGCGGCCGCCTGTTTTCTTATTGAGGTGAACTATAGAAGTTACGAACAC
ATCAGTTCTGGGACTGGTGAGTGCTTGATTTTAAGGGGGATTCCAATCTC
TCAGCCTGCTTAGTGCACTTAATGAAATACATACAGACCCAGTTCCTGGT
GCTCTGCAATTATGTATATTTAGGCTACACATACAATTTGTCTAAGAAGA
CTGTGGACATTTCCCACATAAAGAAAAACAGTCTTTAATCATCACATTAT
TCCTTTTAGCCTGTTCCTTGACCTCTTAAAATAGTTGTCAGNTCTAATAA
CGTGGCATATTTGGTGAGAGCTTTAAAATATAGATGTTACAATGTTGTCA
CCCCAAGATAAAAAGCATCTTTGAATTGCCACTTAACTTTATAAGTTACC
ACACATGATATATTAACTTTTAAATATAACCTAAAGACTACTAGTCTTGA
AATCATTAGAGTTTGATGCTAATGTCCATGGGTATGAATAATAGAAAATA
TTTTGATGTCTTGTCATTGAATAGAACAGTCAAAATAAGTCAAAGAAGCA
GTTTGGCAACAAATTTGCCTCACTGTTTAGCTCAATGGGGGAGACACTTT
TAGACTGAAGAGCGCAACTTACTAGCTTATATTTTCATTGACTGTCTTTA
AAAAGCAACCTAGATAGACTATCAACCCCTGCCACCATATTACACAGTTT
CATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h21.g1 MSMg01no326_h21.g1 CHROMAT_FILE:
MSMg01no326_h21.g1 PHD_FILE: MSMg01no326_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:13 2005
         (252 letters)



>mm_chr2_7108243_7108894
          Length = 652

 Score =  449 bits (232), Expect = e-131
 Identities = 247/252 (98%), Gaps = 2/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatatattaacttttaaatataacctaaagactactagtcttgaaatc-attagagtt 59
           |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct: 201 atgatatattaacttttaaatataacctaaagactacttgtcttgaaa-ctattagagtt 259

                                                                       
Query: 60  tgatgctaatgtccatgggtatgaataatagaaaatattttgatgtcttgtcattgaata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgatgctaatgtccatgggtatgaataatagaaaatattttgatgtcttgtcattgaata 319

                                                                       
Query: 120 gaacagtcaaaataagtcaaagaagcagtttggcaacaaatttgcctcactgtttagctc 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacagtctaaataagtcaaagaagcagtttggcaacaaatttgcctcactgtttagctc 379

                                                                       
Query: 180 aatgggggagacacttttagactgaagagcgcaacttactagcttatattttcattgact 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 aatgggggagacacttttagactgaagagcgcaacttactagcttatattttcagtgact 439

                       
Query: 240 gtctttaaaaag 251
           ||||||||||||
Sbjct: 440 gtctttaaaaag 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)