| Query= MSMg01no326_k21.g1 MSMg01no326_k21.g1 CHROMAT_FILE:
MSMg01no326_k21.g1 PHD_FILE: MSMg01no326_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:25 2005
(644 letters)
>mm_chr2_88254807_88255850
Length = 1044
Score = 1137 bits (588), Expect = 0.0
Identities = 635/666 (95%), Gaps = 25/666 (3%)
Strand = Plus / Plus
Query: 1 ttcctattgggaaactgtgtgttggggtgtaaaaaaaaaaaaaaaaaaagaaaaaagaaa 60
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Sbjct: 182 ttcctattgggaaactgtgtgttggggtgtaaaaaaaaaaaaaaaa---gaaaaaagaaa 238
Query: 61 atgtatgaggaatcttgatattgtttattttataggacaaattatgtaaaattgttttta 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atgtatgagaaatcttgatattgtttattttataggacaaattatgtaaaattgttttta 298
Query: 121 ttggaacatatctgacctccaagttacacatttaaattatgtcactgaatggatatttct 180
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Sbjct: 299 ttggaacatatctgacctccaagttacacatttaaattatgtcactgaatggatatttct 358
Query: 181 ataatacttaatctttttattagtcaagtttgtctgccacataagatgtgaaaatctacg 240
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Sbjct: 359 ataatacttaatctttttattagtcaagtttgtctgccacataagatgtgaaaatctacg 418
Query: 241 taaaaataattccatagaaggagtgattaacatataaatcaataaatgtccagtgacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taaaaataattccatagaaggagtgattaacatataaatcaataaatgtccagtgacttc 478
Query: 301 atattcagagatttgtatggtctgaatctgtaatttaaactttaatgccacagaataaat 360
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 479 atatccagagatttgtatggtctgaatctgtaatttaaactttaatggtacagaataaat 538
Query: 361 attccaagaattcagtgaatttgacttctttgaagaaattgatattttcttatcaaaaga 420
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Sbjct: 539 attccaagaattcaatgaatttgacttctttgaagaaattgatattttcttatcaaaaga 598
Query: 421 taacaggtaaaaagggaagagattccctagttaaatattttatctctaaacaaaagtatt 480
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Sbjct: 599 taacaggtaaaaagggaagagattccctagttaaatattttatctctaaacaaaagtatt 658
Query: 481 ttcattaaaggtcaaggagagaatcaatcatatatatatatatatatatatatatatat- 539
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttcattaaaggtcaaagagagaatcaatcatatatatatatatatatatatatatatata 718
Query: 540 ---------------------tactttatccatcaagaataagataacaatccaatagga 578
|||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tatatatatatatatatagattactttatccatcaagaataagataacaatccaatagga 778
Query: 579 tttgattcatgaaatttgagacactgggttagagattgagagtacttctaatttctacgt 638
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Sbjct: 779 tttgattcatgaaatttgagacactgggttagagattgagagtacttctaatttctacgt 838
Query: 639 ttccca 644
||||||
Sbjct: 839 ttccca 844
Score = 60.7 bits (31), Expect = 4e-13
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 506 aatc-atatatatatatatatatatatatatatat 539
|||| ||||||||||||||||||||||||||||||
Sbjct: 740 aatctatatatatatatatatatatatatatatat 706
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 717 atatatatatatatatatatatatatatat 688
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 719 atatatatatatatatatatatatatatat 690
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 721 atatatatatatatatatatatatatatat 692
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 723 atatatatatatatatatatatatatatat 694
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 725 atatatatatatatatatatatatatatat 696
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 727 atatatatatatatatatatatatatatat 698
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 729 atatatatatatatatatatatatatatat 700
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 731 atatatatatatatatatatatatatatat 702
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 510 atatatatatatatatatatatatatatat 539
||||||||||||||||||||||||||||||
Sbjct: 733 atatatatatatatatatatatatatatat 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 11
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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