Query= MSMg01no326_n18.b1 MSMg01no326_n18.b1 CHROMAT_FILE:
MSMg01no326_n18.b1 PHD_FILE: MSMg01no326_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:38 2005
(369 letters)
>mm_chr2_116755055_116755823
Length = 769
Score = 683 bits (353), Expect = 0.0
Identities = 362/365 (99%)
Strand = Plus / Minus
Query: 5 gaattcctgagatgctctccatgtagaacatttatactctctatgggtcatctaggtatc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcctgagatggtctccatgtagaacatttatactctctatgggtcatctaggtatc 510
Query: 65 agagaaatacggccatgcacattttttggtgtgtaaggagtatgtttaggttgtttattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agagaaatacggccatgcacattttttggtgtgtaaggagtatgtttaggttgtttattt 450
Query: 125 tgcacgacacaactcacaaaccttgcttagtagagctttattgagatatagttcatggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgcacgacacaactcacaaaccttgcttagtagagctttattgagatatagttcatggaa 390
Query: 185 cacaatgtctgtctacttgaaatgtttagattttcacataactgtacaactagcaacaaa 244
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 389 cacaatgtctgtctacttgaaaggtttagattttcacacaactgtacaactagcaacaaa 330
Query: 245 atgtaagtgtataatagttcactgtcccatgaagaaagccccttcaatttctgttcggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgtaagtgtataatagttcactgtcccatgaagaaagccccttcaatttctgttcggta 270
Query: 305 ccttcagctctggacaaccattttcttctagcatgctgattgtgaagtccatctttgtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccttcagctctggacaaccattttcttctagcatgctgattgtgaagtccatctttgtaa 210
Query: 365 taaca 369
|||||
Sbjct: 209 taaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_n18.g1 MSMg01no326_n18.g1 CHROMAT_FILE:
MSMg01no326_n18.g1 PHD_FILE: MSMg01no326_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:38 2005
(606 letters)
>mm_chr2_116606801_116607806
Length = 1006
Score = 387 bits (200), Expect = e-111
Identities = 454/566 (80%), Gaps = 75/566 (13%)
Strand = Plus / Plus
Query: 1 ttttatatttgcttttatcttatcctctctacttctgaattttatctgttgtaatatcaa 60
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 201 ttttatatttgtttttatcttatcctttctacttctgaattttatctgttgtgatatcaa 260
Query: 61 agcaacattgaaaagcagttacactatatatgcataaaagagttaagactgtaactcaaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agcaacattgaaaagcagttacactatatacgcataaaagagttaagactgtaactcaaa 320
Query: 121 tgtgtgtgcaactctgagatatggtgtgtgcaacagtgtcatgt-g-gtgcatgcaacag 178
||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||
Sbjct: 321 tgtgtgtgcaactctgagatatggtgtgtgcaacagtgtgatgttgtgtg--tgcaacag 378
Query: 179 tgtgaagt---gtgtgaaa-agtgcaatgacatgtg-----tgcaacaatgtgatgtggt 229
|||| || ||||| || |||| | |||||| ||||||| ||||| ||||
Sbjct: 379 agtgatgtactgtgtgcaacagtg---t--catgtggtacatgcaacagtgtgaagtgg- 432
Query: 230 gtgtacagcagggtgagtgatgcagcgtgtgcaacagtgtgatgttgtgtgtgcaacaga 289
||| || || |||| ||| || ||||||||||||||||||| || ||| || |||
Sbjct: 433 gtg---agaagtgtga-tga--cat-gtgtgcaacagtgtgatgtggtatgtacagcagt 485
Query: 290 gtgatgtactgtgtgcaacagtgtcatgt---g-gtgcatgcaacactgtga---agtgc 342
||||| || ||| ||||||| | |||| | ||| || |||| | ||| ||||
Sbjct: 486 gtgatata---tgtacaacagtatgatgttttgtgtg--tgtaacaatatgatgtagtg- 539
Query: 343 ccc---acaa--gtgtgatgacat---gtgtgcaacagtgtgatgtggtgtgtgcaacag 394
|||| ||||||| || ||||| | ||||| ||||||||||||| |||||
Sbjct: 540 ---tgtacaatagtgtgat---attgtgtgtggagcagtgcgatgtggtgtgtgtaacag 593
Query: 395 tgtgatgtggtgtgtgtaacagagtgatgtggtgtgtgtagcagtgtcatgtggtgcatg 454
|||||||||||||||| ||||| ||||||||||||||| | |||||| ||||| || |
Sbjct: 594 tgtgatgtggtgtgtgcaacagtgtgatgtggtgtgtgaaacagtgttatgtg-tgta-- 650
Query: 455 caacagtgtgaagtgtgta---ag--aagtgtgatgacatg---tgtgcaacagtgtgat 506
||||||||||| | |||| || | ||||||| || ||||||||||||||||
Sbjct: 651 caacagtgtga--tttgtatacagcca--tgtgatg---tggtatgtgcaacagtgtgat 703
Query: 507 gtggta--tgtacagcagtgtgatat 530
|| ||| |||| | |||||||||||
Sbjct: 704 gttgtaggtgta-a-cagtgtgatat 727
Score = 335 bits (173), Expect = 7e-96
Identities = 225/243 (92%), Gaps = 2/243 (0%)
Strand = Plus / Plus
Query: 361 tgtgtgcaacagtgtgatgtggtgtgtgcaacagtgtgatgtggtgtgtgtaacagagtg 420
|||||||||| || ||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 323 tgtgtgcaactctgagatatggtgtgtgcaacagtgtgatgttgtgtgtgcaacagagtg 382
Query: 421 atgtggtgtgtgtagcagtgtcatgtggtgcatgcaacagtgtgaagtgtgtaagaagtg 480
|||| |||||| | |||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 383 atgtactgtgtgcaacagtgtcatgtggtacatgcaacagtgtgaagtgggtgagaagtg 442
Query: 481 tgatgacatgtgtgcaacagtgtgatgtggtatgtacagcagtgtgatatatgtacaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgatgacatgtgtgcaacagtgtgatgtggtatgtacagcagtgtgatatatgtacaaca 502
Query: 541 gtgtgatgtt--gtgtgtgtaacaatatgatgtagtgtgtacaatagtgtgatgtggtgt 598
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 503 gtatgatgttttgtgtgtgtaacaatatgatgtagtgtgtacaatagtgtgatattgtgt 562
Query: 599 gtg 601
|||
Sbjct: 563 gtg 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 2
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
