Query= MSMg01no326_p12.b1 MSMg01no326_p12.b1 CHROMAT_FILE:
MSMg01no326_p12.b1 PHD_FILE: MSMg01no326_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:46 2005
(685 letters)
>mm_chr2_180413062_180414145
Length = 1084
Score = 1230 bits (636), Expect = 0.0
Identities = 672/686 (97%), Gaps = 11/686 (1%)
Strand = Plus / Plus
Query: 5 gaattcacttttc-c-tttaactatataaaaattacatagctgtaactcatgagagaccc 62
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcac--ttcacttttaactatataaaaattacatagctgtaactcatgagagaccc 262
Query: 63 atcttactaatagcactttacactgtgggttgctgtctctactactagctttctctgccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcttactaatagcactttacactgtgggttgctgtctctactactagctttctctgccc 322
Query: 123 tctcgtggggtaagaaggtattgaccaacactaaggaggaaggcatctctagtcctgtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctcgtggggtaagaaggtattgaccaacactaaggaggaaggcatctctagtcctgtgg 382
Query: 183 actactagtggaagcaaaggttgtcatgaccagttctttgtaatggaaactaagctgctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actactagtggaagcaaaggttgtcatgaccagttctttgtaatggaaactaagctgctg 442
Query: 243 aaagtttgacgggagtagggaagtagagtgctccgcatgggaacccaactctattctcac 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaagtttgacgg-agtagggaagtagagtgctccgcatgggaacccaactctattctcac 501
Query: 303 accatgggtccattagtaaggttgctatagctctgttggtcaccaggtggcagtaatgat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 accatgggtccattagtaaggttgctatagctctgttggtcaccaggtggcagtaatgat 561
Query: 363 ccacaccac--cacgaaagagaaaggcattaggggaacaaaccctgctcatgtaccccca 420
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccaca--aaggcaggaaagagaaaggcattaggggaacaaaccctgctcatgtaccccca 619
Query: 421 aggtagaaccccacaactgcatgaagttgaaacaggatccaggtgcagggtaggggtcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggtagaaccccacaactgcatgaagttgaaacaggatccaggtgcagggtaggggtcca 679
Query: 481 cacctatagtcccacccatcacagtcacgctgcctgatggct-gctcttaggagggcagg 539
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct: 680 cacctatagtcccacccatcccagtcacgctgcctgatggctag-tcttaggagggcagg 738
Query: 540 ctggccccatgcaggtatctcacctccagaagcctaaggggagttgctttttttgaagac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctggccccatgcaggtatctcacctccagaagcctaaggggagttgctttttttgaagac 798
Query: 600 agtgatcaagcagcaccttgaaacaaggccaggtgctgaattctgttcctcagctctggc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agtgatcaagcagcaccttgaaacaaggccaggtgctgaattctgttcctcagctctggc 858
Query: 660 tcatgtaacttaggacttcccattgc 685
||||||||||||||||||||||||||
Sbjct: 859 tcatgtaacttaggacttcccattgc 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_p12.g1 MSMg01no326_p12.g1 CHROMAT_FILE:
MSMg01no326_p12.g1 PHD_FILE: MSMg01no326_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:46 2005
(340 letters)
>mm_chr2_180558757_180559496
Length = 740
Score = 658 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Minus
Query: 1 tagacacatgtgaggagcaggcagaagacagcatgctagagagcagacatttcattgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tagacacatgtgaggagcaggcagaagacagcatgctagagagcagacatttcattgtat 481
Query: 61 ctacaccgtaaaattgcaactgtgtatccctcagagctgaggtgtgccacctacgtgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctacaccgtaaaattgcaactgtgtatccctcagagctgaggtgtgccacctacgtgaac 421
Query: 121 tgcaaggcagccacagccctgccctctgtgtcctcatcctggaagagggttgctttgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgcaaggcagccacagccctgccctctgtgtcctcatcctggaagagggttgctttgtcc 361
Query: 181 atctggaaatctcttagaattccatgtctgtgggaggcagaggagaacgcagagctggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atctggaaatctcttagaattccatgtctgtgggaggcagaggagaacgcagagctggaa 301
Query: 241 ggtgatatgcggcttctgcctggagactccgccccaccccagacttcctgtgtcttctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtgatatgcggcttctgcctggagactccgccccaccccagacttcctgtgtcttctgt 241
Query: 301 gaagaggtgatgaatccactgagtggcactgaaggtatca 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaagaggtgatgaatccactgagtggcactgaaggtatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
