BAC Information

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BAC

Clone NameMSMg01-327A05
Chromosome2 (Build37)
Map Location 110,674,927 - 110,675,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A05.T7 (MSMg01no327_a05.b1)MSMg01-327A05.TJ (MSMg01no327_a05.g1)
ACCAG444484AG444485
length745750
length of high quality
(start - end)
601 (46 - 646)675 (76 - 750)
definitionCHROMAT_FILE: MSMg01no327_a05.b1 PHD_FILE: MSMg01no327_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005CHROMAT_FILE: MSMg01no327_a05.g1 PHD_FILE: MSMg01no327_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAATTCCTTCTGTTTAATAGCTGAGTAGTACTCCATTGTATA
AATACACCACATTTTCCGTATCCATTCCTCTGTTGAGGGACATCTGGGTT
CTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATGGTGGAG
CATGTATTCTTCTTACCAGTTGGGACAACTTTTGGAAATATGCCCAGGAG
AGGAAATGCGGGATCCTCCTGTAGTACTATGTCCAATTTTCTGAGGAACC
TCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAA
TGGAGGAGTGTTCCTCTTTCTCCACATCCACACCAGCATCTGTTGTCACC
TGAATTTTTGATCTCACCCATTCTGACTGGTGTGAGGTGGAATCTCAGGG
TTGTTTTGATTTGCATTTCCCAGATGATTAAGGATGGTGAATAATTTTTC
AGGTGATTCTCAGCCACTAGGTATTCCTCAGGTGAGAATTCTTTGTTTAG
CTTTGAGCCCTATTTTTTAATGAGGTTATTTGATTTTCTGGAGTCCACCT
TCTTATTTATATATATATTGGATTTATTAGTCCCTGTATTAGTCAGGTTT
CTCTAGAGTCACAGAACTTATGGATAGTCTCTAAATAGAAAAGGAATTTA
TGACTTACAGTCGGTAGCCCAATTCCCAAAAATTGGGCAGTCGCA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAACCTTTTACTTACTACTACTG
TTGTCAGATAGATAAAGAACACATCCTGATACTTGGTGATTCATAAACAA
CAGATCCTCTGCACTGATATGGGTTCTTAATTATCAGTCTGGATGCATTA
ACTAAACTGAAGGGTCCAGTTTGTCATTTATAACAACAGTCTCTATGGAA
ACAGAGTCAAGTGTAATTTGGCTTTGGTGGATTTCAGTGACGTTTTGCTA
CTGTTAGCAGCACAGGGTCATCTGAATGGACATAGCTCAGAGTTGAGAGA
ACTTAATGGCTTTGAGGGATGCTATATACAAGTCTGTGACTTTTGGTATG
AAGCAATATGTGCTACCAACCACAACTTGTTATACCACCCCATATTTTCT
TCATACGCACACTCTTATTCAAGCTTCCAGTTCATTTCTCTTCCTTGTGT
GTACAGTAGCAAGCAAGCCTCTTGCTTCGATTAGGTAAATATACACTAAG
CTCAGAACATATACTCTCAAATTAAGTACCCTGGGTTAAGTCTTTAATAG
CAAAGAAATAAGCAAGAGATGGGAAAACACAGAGAAGAGGAAGGTAGGGT
AGAAAAGAAGAGGGAAGAAGAGAGGAGATATGAAAAAAGAAATCTCAGAA
GTAATTGCTCAGCCTCCTTTGACTTGTTTCTCTCCAAGGCTATATAATCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a05.g1 MSMg01no327_a05.g1 CHROMAT_FILE:
MSMg01no327_a05.g1 PHD_FILE: MSMg01no327_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:49 2005
         (675 letters)



>mm_chr2_110674727_110675801
          Length = 1075

 Score = 1249 bits (646), Expect = 0.0
 Identities = 667/674 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaccttttacttactactactgttgtcagatagataaagaacacatcctgatacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaccttttacttactactactgttgtcagatagataaagaacacatcctgatacttg 260

                                                                       
Query: 61  gtgattcataaacaacagatcctctgcactgatatgggttcttaattatcagtctggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgattcataaacaacagatcctctgcactgatatgggttcttaattatcagtctggatg 320

                                                                       
Query: 121 cattaactaaactgaagggtccagtttgtcatttataacaacagtctctatggaaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaactaaactgaagggtccagtttgtcatttataacaacagtctctatggaaacaga 380

                                                                       
Query: 181 gtcaagtgtaatttggctttggtggatttcagtgacgttttgctactgttagcagcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaagtgtaatttggctttggtggatttcagtgacgttttgctactgttagcagcacag 440

                                                                       
Query: 241 ggtcatctgaatggacatagctcagagttgagagaacttaatggctttgagggatgctat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ggtcatctgaatggacatagctcagagttgagagaacttaatggctttgaggaatgctat 500

                                                                       
Query: 301 atacaagtctgtgacttttggtatgaagcaatatgtgctaccaaccacaacttgttatac 360
           ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 501 atacaagtctgtgacttttggtatgaagcaatatgtgctcccaagcagaacttgttatac 560

                                                                       
Query: 361 caccccatattttcttcatacgcacactcttattcaagcttccagttcatttctcttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccccatattttcttcatacgcacactcttattcaagcttccagttcatttctcttcct 620

                                                                       
Query: 421 tgtgtgtacagtagcaagcaagcctcttgcttcgattaggtaaatatacactaagctcag 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtgtacagtaacaagcaagcctcttgcttcgattaggtaaatatacactaagctcag 680

                                                                       
Query: 481 aacatatactctcaaattaagtaccctgggttaagtctttaatagcaaagaaataagcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 aacatatactctcaaattaagtaccctgggttaagtctttaatagcaaagaaagaagcaa 740

                                                                       
Query: 541 gagatgggaaaacacagagaagaggaaggtagggtagaaaagaagagggaagaagagagg 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 gagatgggaaaacacagagaagaggaaggtaggatagaaaagaagagggaagaagagagg 800

                                                                       
Query: 601 agatatgaaaaaagaaatctcagaagtaattgctcagcctcctttgacttgtttctctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agatatgaaaaaagaaatctcagaagtaattgctcagcctcctttgacttgtttctctcc 860

                         
Query: 661 aaggctatataatc 674
           ||||||||||||||
Sbjct: 861 aaggctatataatc 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)