BAC Information

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BAC

Clone NameMSMg01-327A06
Chromosome2 (Build37)
Map Location 78,078,934 - 78,079,310
singlet/doubletsinglet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A06.T7 (MSMg01no327_a06.b1)MSMg01-327A06.TJ (MSMg01no327_a06.g1)
ACCAG444486AG444487
length754734
length of high quality
(start - end)
382 (43 - 424)346 (71 - 416)
definitionCHROMAT_FILE: MSMg01no327_a06.b1 PHD_FILE: MSMg01no327_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005CHROMAT_FILE: MSMg01no327_a06.g1 PHD_FILE: MSMg01no327_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCGGAAT
TCTCAGCTCCTTCTCCACACAATGTCTGCTGGATGTTGCCATGTTCCCAC
CATGGTGATATTGGACTAAACCTCTCAAACTGAAAGCTAGCCCCAATTAA
ATATTTCTTTTTATAAGAGTTGCCTTGGTCATGGTGTCTCTTCATAATGA
TAGAGCACCAACTAAGAAACAAGGCTGATGGAGTAAGAGGCTCTGAGACT
TCACTCTGGCCTCACAGTGAAAGGCAGAGCAGTTGAGCACATACTCCTTG
GAAAAGAAACTTTCTGGTTCTCCTGAAAGAGATCACTGTTGATACGAATC
CCAAAGGTGTCTTTGGTTACATATTGGTGTCTTAGTTATTCACTAATAAA
TTTTTGAGAAGGCCTATTATACCCCACCCCACCCAATTGGGGGTTCTAAG
TTTCATGAGGAAGGAAGACTTGTTACGTATATGGACAAGAATTTACACAG
TAATATTTGGCTTACGTTCCAATCAGCAATTTAACTGATTAATGCCCATG
TTGGTGAATGAAAGTCTGTTTTGAGTTTCGGAAAAGTAACTTTGTCTCCA
GGTTGAGGGACTATTATTCCCCGATATGAAATCATTCCTGATTAAGAAAG
CTTGCCGTATTGTAATGAATTTTGTACTCGATCCAATGACCTCTTGGCTC
TTGTTTGGCATACCCGACTTTTTATCATTTCACCTGAATCATTTCTTGTA
CTCA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGAGTGTCTATGGCATGTTACAAGAAGG
CATACTTATGCCTAGGTGAAATGGAAGGAGCCACATACTGGCACATGGCA
TGGTCCTGATCAGATATTCAATATGGGAAAGAGAGCATGTTTGTGTTCTT
TTCCCAGGATGCTGAAGGAGCATGCTAGCTGCCAGGGTGTGACATGCTGA
TGCTAAGACAAAGAATGATACTGACTGTGAGCTTTCAGAGTGCCCTGACA
ACGGTGACTGGGAAGCTGTTTTTGACCCACCTTTGCTTGCCTATACCCAG
ATTGGACAAGCTGCCTTGCTTCAAGCTTTTAGACCTTGTGGGACAGAGAA
CATGGATCAAAAAAGATAACCACCACGACTCTTCTCTTTTGTTTAATGTG
ACCATTTATTCTACCTCAATCATAGACTGGTCTATAAATCAATCCAATAT
TTGGAAATAACAGTCTTCATTTGGAAGGCTGGGTCTGGACAGTTTTAGAG
ACATTTGAAAGTTAGCTACAGTTCTCTATGATGATGTATTAGCAATAGAT
AAAAATTGGGACAGATTTTATATTTCAAACAAATGTTCATGCATGTGTTA
AGGCTCCAAATCTGTTATTGATTGCTCATTGTTAAATTACTTTTTCTTCC
ATAGCATTTAATGGTGCATTTAAGTTGTATTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a06.b1 MSMg01no327_a06.b1 CHROMAT_FILE:
MSMg01no327_a06.b1 PHD_FILE: MSMg01no327_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:49 2005
         (382 letters)



>mm_chr2_78078732_78079513
          Length = 782

 Score =  683 bits (353), Expect = 0.0
 Identities = 371/377 (98%), Gaps = 2/377 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctccttctcca-cacaatgtctgc-tggatgttgccatgttcccaccatg 62
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 203 gaattctcagctccttctccagcacaatgtctgcctggatgttgccatgttcccaccatg 262

                                                                       
Query: 63  gtgatattggactaaacctctcaaactgaaagctagccccaattaaatatttctttttat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgatattggactaaacctctcaaactgaaagctagccccaattaaatatttctttttat 322

                                                                       
Query: 123 aagagttgccttggtcatggtgtctcttcataatgatagagcaccaactaagaaacaagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 aagagttgccttggtcatggtgtctcttcataatgatagagcaccaactaagacacaagg 382

                                                                       
Query: 183 ctgatggagtaagaggctctgagacttcactctggcctcacagtgaaaggcagagcagtt 242
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgaaggagtaagaggctctgagacttcactctggcctcacagtgaaaggcagagcagtt 442

                                                                       
Query: 243 gagcacatactccttggaaaagaaactttctggttctcctgaaagagatcactgttgata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagcacatactccttggaaaagaaactttctggttctcctgaaagagatcactgttgata 502

                                                                       
Query: 303 cgaatcccaaaggtgtctttggttacatattggtgtcttagttattcactaataaatttt 362
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 cgaatcccaaaggtgtctttggttacatattggtgtcttagttatacactaataaatttt 562

                            
Query: 363 tgagaaggcctattata 379
           |||||||||||||||||
Sbjct: 563 tgagaaggcctattata 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)