BAC Information

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BAC

Clone NameMSMg01-327B07
Chromosome2 (Build37)
Map Location 105,197,040 - 105,347,362
singlet/doubletdoublet
Overlap gene0610012H03Rik, Rcn1
Upstream geneD430041D05Rik, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327B07.T7 (MSMg01no327_b07.b1)MSMg01-327B07.TJ (MSMg01no327_b07.g1)
ACCAG444532AG444533
length761730
length of high quality
(start - end)		371 (48 - 418)335 (72 - 406)
definitionCHROMAT_FILE: MSMg01no327_b07.b1 PHD_FILE: MSMg01no327_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:54 2005CHROMAT_FILE: MSMg01no327_b07.g1 PHD_FILE: MSMg01no327_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,347,038 - 105,347,362)(105,197,040 - 105,197,374)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAACACGCGGA
ATTCCATATCATCATTACTCACCATGAATTTACATTTGTTCTTTTTTTAT
TTCTCTCTCTCTTTTTTAGATATTTTCTTTATTTGCATTTCAAATGTTAT
CCCCTTTCCTAGTTTCCCCTCTGAAATCCCCCTATCCCATTTCTCTTACC
CCTGCTCACCAACCCACCCTCTCTCGCTTCCCTGCCCTGATATTTCCCTA
CACTAGGGCATTGTTTGTTTGTTTGTTTGTTTATTGGCTCATTTCTAAAG
CTAGAGGCAGAAATAGACTAATGCGCTGGTTTGAAGGCTCTAGATTGAGG
CTTCCACACTTTGCTGTTGAACATTACAAAACATTTTCAACAACAGTTAT
CTCTGTAGACTGCGTGTTTCCCACCACACCCCACAGGGATGAGGACTGTG
ATGATGGGTGAGGAAACTGCTGAGACACAGTGGTAACATCTCTCATTGTT
ATTGGCCCGAAGGTTGCCCAAAGGTTGCAATCCGTGAGAAGATGGATCCA
GGTGGGGAAGTGAGCTAGCCCGCAGTTCATCACTCCTATTTCTTTTAACT
CTCCCTATCCTCTCCTCTTATTTTTCATATTCTCATTTTCCCTTCTAATT
TCCTATTTTCCCTCTTTCCACTATTTTCACCCTCCCCCTCATCTTTTTCT
TCTCTAACTCTTCCCCTCCTTATCTTCCATTTTAATTTCCCTATATCCTA
CTTCCTTTTTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCGGGACAGTATTGCTTCTTATTAGT
GCGTGGGCTGTCTGCCTTTGAGTCAGGAATATGTCCCTTGTGGCCAGAAA
GGACATGGGTTGTGGGCAGAACAAATAGTGTCAGGGAAATGATTATCTGT
TTGGTGCATTTTAAGACAAGTGTGATTGGACACAGCACAGAAGCTGATGG
AGGTCAAGTTGTTTGTTAGCGATCAGCTGCCAGGTGGCAGAGGCAGGAGC
GAGGGACACAGTGTAACTAACTTCATTCTCTTGCTTTCTGTCTGGTGTGC
TGATTCTGTAACATTGTTGCCTTTTAGTGCACAGATGTGTGAGCAGAGGA
CATTCAATACTCGGTCTGCACCCCCCCCAATATTATTGGAGACCCTATGA
CTGTTGGGGCAGTATAAATAATACCACCTTCTATCCAAGTCTGGTGCTTT
TCTGTGTGTTTAGAGGCATTGAAATTGTACACCTCACACACAAATATCAG
TGATGAAAGAGAAGACATCTTGTTCCATTTTGAGTTTTGGAAAGAGCCTA
AGAATATATGATTGATAGATCAACTAAATATTTGAAATGCTTTACCACTA
TAGCCCACAAGGAGAAGATACCATTAATCTTTTCCTTACTGCTGAAGGAT
ATAGACCTATGCTCATCACCCTTTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_b07.b1 MSMg01no327_b07.b1 CHROMAT_FILE:
MSMg01no327_b07.b1 PHD_FILE: MSMg01no327_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:54 2005
         (371 letters)



>mm_chr2_105346600_105347370
          Length = 771

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 45  tttttttatttctctctctcttttttagatattttctttatttgcatttcaaatgttatc 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttttttatttctctctctcttttttagatattttctttatttgcatttcaaatgttatc 704

                                                                       
Query: 105 ccctttcctagtttcccctctgaaatccccctatcccatttctcttacccctgctcacca 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ccctttcctagtttcccctctgaaatccccctatcccatttctcttacccctgctcacca 644

                                                                       
Query: 165 acccaccctctctcgcttccctgccctgatatttccctacactagggcattgtttgtttg 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acccaccctctctcgcttccctgccctgatatttccctacactagggcattgtttgtttg 584

                                                                       
Query: 225 tttgtttgtttattggctcatttctaaagctagaggcagaaatagactaatgcgctggtt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttgtttgtttattggctcatttctaaagctagaggcagaaatagactaatgcgctggtt 524

                                                                       
Query: 285 tgaaggctctagattgaggcttccacactttgctgttgaacattacaaaacattttcaac 344
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgaaggatctagattgaggcttccacactttgctgttgaacattacaaaacattttcaac 464

                                    
Query: 345 aacagttatctctgtagactgcgtg 369
           |||||||||||||||||||||||||
Sbjct: 463 aacagttatctctgtagactgcgtg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_b07.g1 MSMg01no327_b07.g1 CHROMAT_FILE:
MSMg01no327_b07.g1 PHD_FILE: MSMg01no327_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:54 2005
         (335 letters)



>mm_chr2_105196840_105197574
          Length = 735

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcgggacagtattgcttcttattagtgcgtgggctgtctgcctttgagtcaggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcgggacagtattgcttcttattagtgcgtgggctgtctgcctttgagtcaggaata 260

                                                                       
Query: 61  tgtcccttgtggccagaaaggacatgggttgtgggcagaacaaatagtgtcagggaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccttgtggccagaaaggacatgggttgtgggcagaacaaatagtgtcagggaaatg 320

                                                                       
Query: 121 attatctgtttggtgcattttaagacaagtgtgattggacacagcacagaagctgatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatctgtttggtgcattttaagacaagtgtgattggacacagcacagaagctgatgga 380

                                                                       
Query: 181 ggtcaagttgtttgttagcgatcagctgccaggtggcagaggcaggagcgagggacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcaagttgtttgttagcgatcagctgccaggtggcagaggcaggagcgagggacacag 440

                                                                       
Query: 241 tgtaactaacttcattctcttgctttctgtctggtgtgctgattctgtaacattgttgcc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 441 tgtaactaacttcattctcttgctttctgcctggtgtgctgattctgtaacatcgttgcc 500

                                              
Query: 301 ttttagtgcacagatgtgtgagcagaggacattca 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttagtgcacagatgtgtgagcagaggacattca 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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