Query= MSMg01no327_g04.b1 MSMg01no327_g04.b1 CHROMAT_FILE:
MSMg01no327_g04.b1 PHD_FILE: MSMg01no327_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:17 2005
(380 letters)
>mm_chr2_141557540_141558320
Length = 781
Score = 582 bits (301), Expect = e-170
Identities = 352/375 (93%), Gaps = 13/375 (3%)
Strand = Plus / Plus
Query: 7 ggaattcactcaaaatgtagacttttacttagggtaaagctaagctgtagagaaagagag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggaattcactcaaaatgtagacttttacttagggtaaagctaagctgtagagaaagagag 278
Query: 67 aaggagagagaaaaagagagagagagagagagactgacagagacatagagaaacacagag 126
| |||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 279 a--gagagagaaa--------gagagacagagactgacagagacagagagaaacacagag 328
Query: 127 agtgtgtgtctagaattctgtggcttactgaatgtaaatgctttcccccc-tctttgcca 185
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 329 agtgtgt--ctagaattctgtggcttactgaatgtaaatgctttccccccctctttgcca 386
Query: 186 acagatccaaatcaagcattgtgcttatgagacgatttgtcctcctctgtcatttaaggg 245
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 387 acagatccaaatcaagcattgtgcttatgagaggatttgtcctcctctgtcatttaaggg 446
Query: 246 tctgtgaatatacagtggggtcaagtatttactatgatgatatttattccattgacttct 305
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 447 tctgtgaatatacagtggggtcaagtatttactatgatgacatttattccattgacttct 506
Query: 306 ctagcctgatgtcagttgtctctatctatctatctatctatctatctatctatctatcta 365
||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| |||
Sbjct: 507 ctagcctgatgtcagttgtctctatctatctatctatctgtctgtctgtctgtctgtctg 566
Query: 366 tctatctatctatct 380
|||||||||||||||
Sbjct: 567 tctatctatctatct 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space: 286412
Effective search space used: 286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_g04.g1 MSMg01no327_g04.g1 CHROMAT_FILE:
MSMg01no327_g04.g1 PHD_FILE: MSMg01no327_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:17 2005
(344 letters)
>mm_chr2_141739193_141739936
Length = 744
Score = 650 bits (336), Expect = 0.0
Identities = 342/344 (99%)
Strand = Plus / Minus
Query: 1 aataaacaaatcaaattttgcaagtggaaaaagaaaatggcagtatctcatctttccact 60
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 544 aataaacaaatcaaattttgcaagcggaaaaagaaaatggcagtatctcctctttccact 485
Query: 61 acttctccctggtaacacgggggtaaacatgagagtctcatcctaagaatggacagatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 acttctccctggtaacacgggggtaaacatgagagtctcatcctaagaatggacagatta 425
Query: 121 agccttatcaatctgcatgagaaactcaaggtgtcagaattaagtcctgcagggtcacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agccttatcaatctgcatgagaaactcaaggtgtcagaattaagtcctgcagggtcacag 365
Query: 181 catgagatgagagtaacgtgcagacagcccaagcatcaatattccaaaaaagcaactaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catgagatgagagtaacgtgcagacagcccaagcatcaatattccaaaaaagcaactaga 305
Query: 241 taattgcttcatatcacatctagcacacagtgataaagaatgtcagagtaattactccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taattgcttcatatcacatctagcacacagtgataaagaatgtcagagtaattactccta 245
Query: 301 ggataccagcgactgccacactgcaattatcatcacggcctggc 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggataccagcgactgccacactgcaattatcatcacggcctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
