BAC Information

Click to search

BAC

Clone NameMSMg01-327L13
Chromosome2 (Build37)
Map Location 178,361,057 - 178,361,418
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327L13.T7 (MSMg01no327_l13.b1)MSMg01-327L13.TJ (MSMg01no327_l13.g1)
ACCAG445006AG445007
length761728
length of high quality
(start - end)
355 (70 - 424)349 (70 - 418)
definitionCHROMAT_FILE: MSMg01no327_l13.b1 PHD_FILE: MSMg01no327_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:41 2005CHROMAT_FILE: MSMg01no327_l13.g1 PHD_FILE: MSMg01no327_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGAA
TTCACCTGGTGTGTCTCGGGAGAGGCTGTNCATTTGTTTCATAAAAAAAA
ACAAAACAAAACAAACAAAAACAACAACAACAAACAACAACAACAACAAC
AATAAACAAAGCTCCATGTTTGTATGTTTGTAGACCTTGTTCTCATGTAG
AGACAGAAAAGAGGAAATGTTTGGGATGTCATAGAACAAGGAAGGCCTGT
AAAGAGAACAGAACAGAACTACCTCAAGGCTCCTGCCATGACAGAGGTAG
CTGGGAGTGGGAGGGGAGACATCTGCCAAGCATGAAGGGCTTGTCTTGTG
AAGCCGGAGAGAGCATCGCACAGCGCTTTCACGCCAATGCTAAGTGAGCA
CCTTTGGGTAATGTTCAAGTGTCACCCCCACCCTGGATCCACATGATGAG
GAGATGGGAGGGATGGAAGGAGCCAGGCAGACCATGTTAACACAGAACTC
TGAGGGCTTTGGATTTCAGTTGAGCCTTAATGCCATGGTGGTATGTTCCC
TCTTTGATTCTGACCTCTGCCTACTTGAATTGATTTTTGTACCTTTCTAT
TTGTCAACCTTCCTGCTGTCTTTTCTTCCTTTCCTTCTCCCTTTCTTATT
ACCTTCTTTCACCTGGTCTATTTTATTACGCTCCTCTGACACTCTTTTTC
TCTTTCTTTCCCCCTCATTATCTTTGCTCTTTCTCTGCCATCGTACCTAT
TGTCTCCATTC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACCCAGAGCTAGAGAGATGGCTAGGTGGTT
GTGTGAGTATGCTTGTGGCTTTGACAAAGGGCATGGGGTTCGCCCACCTG
GCACTTCAGCTCTGGCCAATCTGACACCTTCTGGCTTCCCACATTTACAC
ACGCACACACACACATACATAAAATAAATCTTTAAAAATAAAAGCATTCA
GTGTAAGAACGGTGTTCTTGGGTATTCTAAATCCACTTATCTAATATCCA
CTTATCAGTGGCTACATATTGTGCGAGTTCTTTTGTGATTGGGTTATCTC
ACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAA
ATTCATTCTTTTTACCCCCCCCACTAGNACTCTATTGTGTAAATGTACCT
CATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAAC
TTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCC
TTCTTACCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGC
AGGATCCTCCGGCTACACTATGTCCATTTTTCTGAGGAATCGCCAGATTG
ACTTCCAGAGTGGTTGTACAAGCTTGCCACCCCACCACCAATGCAAGAGT
GTTCCTCTCTTCTCCAATCCTTCGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_l13.b1 MSMg01no327_l13.b1 CHROMAT_FILE:
MSMg01no327_l13.b1 PHD_FILE: MSMg01no327_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:41 2005
         (355 letters)



>mm_chr2_178360866_178361620
          Length = 755

 Score =  433 bits (224), Expect = e-126
 Identities = 325/372 (87%), Gaps = 29/372 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaggctgtncatttgtttca-taaaaaa--aaacaaaacaa----aacaaacaaaaa- 52
           |||||||||| ||||||||||| |||||||  ||| |||||||    |||||| ||||| 
Sbjct: 192 gagaggctgt-catttgtttcattaaaaaaccaaa-aaaacaacaacaacaaaaaaaaaa 249

                                                                       
Query: 53  ---caacaacaacaaa----caacaacaacaacaacaataa----acaaagctccatgtt 101
              ||| || || |||    ||| || || || || || ||    ||||||||||     
Sbjct: 250 aaccaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaccacaaagctcc----- 304

                                                                       
Query: 102 tgtatgtttgtagaccttgttctcatgtagagacagaaaagaggaaatgtttgggatgtc 161
              ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 305 ---atgtttgtagaccttgttctcatgtggagacagaaaagaggaaatgtttgggatgtc 361

                                                                       
Query: 162 atagaacaaggaaggcctgtaaagagaacagaacagaactacctcaaggctcctgccatg 221
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 362 atagaacaaggaaggcctggaaagagaacagaacagaactacgtcaaggctcctgccatg 421

                                                                       
Query: 222 acagaggtagctgggagtgggaggggagacatctgccaagcatgaagggcttgtcttgtg 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acagaggtagctgggagtgggaggggagacatctgccaagcatgaagggcttgtcttgtg 481

                                                                       
Query: 282 aagccggagagagcatcgcacagcgctttcacgccaatgctaagtgagcacctttgggta 341
           ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||| |
Sbjct: 482 aagccggagagagcatcgcacagcgctttcatgccaacgctgagtgagcacatttgggga 541

                       
Query: 342 atgttcaagtgt 353
           ||||||||||||
Sbjct: 542 atgttcaagtgt 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)