BAC Information

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BAC

Clone NameMSMg01-327M18
Chromosome2 (Build37)
Map Location 170,033,726 - 170,185,601
singlet/doubletdoublet
Overlap geneSilg111, LOC100043739, Bcas1
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
Downstream geneLOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327M18.T7 (MSMg01no327_m18.b1)MSMg01-327M18.TJ (MSMg01no327_m18.g1)
ACCAG445060AG445061
length755754
length of high quality
(start - end)		345 (64 - 408)337 (69 - 405)
definitionCHROMAT_FILE: MSMg01no327_m18.b1 PHD_FILE: MSMg01no327_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:46 2005CHROMAT_FILE: MSMg01no327_m18.g1 PHD_FILE: MSMg01no327_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,185,259 - 170,185,601)(170,033,726 - 170,034,062)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCCA
GCCTCGTTACTCCAGCCAGCATACACTAAAGACCAGCTGAGACACCCAGC
CTTGTGGATTGAGCAACTACTGGATTCTTGGACTTTCCATTCACAGTCAG
ACATTGTTGGATTAGCTGGAGATACATACATAGATGAGAAGGATATTCAT
TCTATAAGTTCTGTGACTCTAGAGAACCCTGACTAACACATCCACCATGC
CCCTGCCTCCCCAGCACTGGAGTCAAAGGCTTGCACCACCACACCCATTC
TCTTCTTTTAACTTTTTATCTTTGGCTGAAGGGTCAAAATCCAGTTGCAT
TCCTTTCCAAACAATACATGAACTGATTACCAAATATTTCCACTCAAATG
CTGACCCTCTGTTACCCCCCCCCCNNAAGCGGNTCCAATACTCCTCAGAG
TATCAAGTCATCAAAATGCATGGTACCATGAAAGCAATGAAAACCAGCAT
CGTTAGCATGCAAGAAGGCTCGAGACACCACTGCTAGAGTCTAATCCGCA
TGCTGACACGATTCACCTTTGAGTCTCATGAATAAAACCACCCATGAAAC
CAGTTACTCAGCTGATAGCACGACCAACTGAAAAACTGCTTCTGAGCCTC
TAAGCTTGTCTATGGGCTCTATAAGTCCCTGATACCGTCCCTCTACAGTA
ACCTGCTGGATTCGCCATGCTGTATAAATTAGCCCTCAGCGTTTTATGTT
CTTCA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCCACCCTCACACTCAGC
AATCTGCCTGCCTCTGCCCCTTTAGTGCTAGAATTAAAGTTGTGTACTGA
TATGCCCTGGCACCATACACACAGACACACGTGCACACACCATTAAGACC
ATTTTAAAAGGAAAGAAAAGCAAGACACACCCGGAGGAGAGCTTTAACGC
AGGAGAGTATATTTTCATGTCGTGTAGTTACTGTCAGTCATCGATAGCTC
GTGCATTACCATCTGCTGTTAGTTTGATCATGATGTCATCAGGACTATGG
GTCATTGAGAAGAATGAAGGTATATATTGCTGCTGCACGAACTCTGACCT
ACAACACTGACACCCCCACCCTCTAGAACATTCTCAAGACTCTTCTCTTG
AAGCAGTCTCCCTTGCCTCCCCCCAATGCAGTACTCACTGCCACTCTCTA
TCCCTGGGTTCAATCAGTTTGTCTATTGACTACCTTTCCTTCCTTCCCTT
CCTTTGTTTGCTTGTTTGCCTTTCCAGACCGTATCTTTCTGTAAACTCTC
TTTTTCCCCCGTTTTTCCCCCCGCCTCTTTTTCCTTTCCCCTAACCCCCA
TTTCTTCCTTTCTCTGGCTCCCACTCTCCTGTATATTCTTTTTTCTTCCT
TATTTTCTCTCTCCCTTGCTTTTCTTTCACCTTCCTCTGATTTTTCTTAC
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_m18.b1 MSMg01no327_m18.b1 CHROMAT_FILE:
MSMg01no327_m18.b1 PHD_FILE: MSMg01no327_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:46 2005
         (345 letters)



>mm_chr2_170184882_170185626
          Length = 745

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ccagcatacactaaagaccagctgagacacccagccttgtggattgagcaactactggat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccagcatacactaaagaccagctgagacacccagccttgtggattgagcaactactggat 661

                                                                       
Query: 63  tcttggactttccattcacagtcagacattgttggattagctggagatacatacatagat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcttggactttccattcacagtcagacattgttggattagctggagatacatacatagat 601

                                                                       
Query: 123 gagaaggatattcattctataagttctgtgactctagagaaccctgactaacacatccac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagaaggatattcattctataagttctgtgactctagagaaccctgactaacacatccac 541

                                                                       
Query: 183 catgcccctgcctccccagcactggagtcaaaggcttgcaccaccacacccattctcttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 540 catgcccctgcctccccagcactggagtcaaaggcttgcaccaccacacccattcacttc 481

                                                                       
Query: 243 ttttaactttttatctttggctgaagggtcaaaatccagttgcattcctttccaaacaat 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttttaactttttagctttggctgaagggtcaaaatccagttgcattcctttccaaacaat 421

                                                      
Query: 303 acatgaactgattaccaaatatttccactcaaatgctgaccct 345
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acatgaactgattaccaaatatttccactcaaatgctgaccct 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_m18.g1 MSMg01no327_m18.g1 CHROMAT_FILE:
MSMg01no327_m18.g1 PHD_FILE: MSMg01no327_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:46 2005
         (337 letters)



>mm_chr2_170033526_170034262
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggccaccctcacactcagcaatctgcctgcctctgcccctttagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggccaccctcacactcagcaatctgcctgcctctgcccctttagtgc 260

                                                                       
Query: 61  tagaattaaagttgtgtactgatatgccctggcaccatacacacagacacacgtgcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaattaaagttgtgtactgatatgccctggcaccatacacacagacacacgtgcacac 320

                                                                       
Query: 121 accattaagaccattttaaaaggaaagaaaagcaagacacacccggaggagagctttaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accattaagaccattttaaaaggaaagaaaagcaagacacacccggaggagagctttaac 380

                                                                       
Query: 181 gcaggagagtatattttcatgtcgtgtagttactgtcagtcatcgatagctcgtgcatta 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggagagtgtattttcatgtcgtgtagttactgtcagtcatcgatagctcgtgcatta 440

                                                                       
Query: 241 ccatctgctgttagtttgatcatgatgtcatcaggactatgggtcattgagaagaatgaa 300
           ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatctgctgggagtttgatcatgacgtcatcaggactatgggtcattgagaagaatgaa 500

                                                
Query: 301 ggtatatattgctgctgcacgaactctgacctacaac 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtatatattgctgctgcacgaactctgacctacaac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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