BAC Information

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BAC

Clone NameMSMg01-327P06
Chromosome2 (Build37)
Map Location 146,714,551 - 146,714,891
singlet/doubletsinglet
Overlap geneGm114
Upstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327P06.T7 (MSMg01no327_p06.b1)MSMg01-327P06.TJ (MSMg01no327_p06.g1)
ACCAG445176AG445177
length761758
length of high quality
(start - end)
373 (44 - 416)341 (72 - 412)
definitionCHROMAT_FILE: MSMg01no327_p06.b1 PHD_FILE: MSMg01no327_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:57 2005CHROMAT_FILE: MSMg01no327_p06.g1 PHD_FILE: MSMg01no327_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGA
ATTCTTTTATCATGCCTCAAGGAAAACACAAGGGGCTGCAACTTAAGGTA
CAATAAATGAGACTAATTATGGAGTGGCAGAAAAGGATATTGCAGAAATC
TACAAAACACCTGAAATTAAAACCAATCTTACTCAAACCATTCCAAAAGA
CTGAAAAAAGAGACTATGTCAAAATTTATTCTATGGGGCTAGAATTAATC
AAACACCAAGTTACATAAAGACATATCGCAAAAGTAGTATACAAACCAGT
ATTTCTGATGAACACATATATAAAAATTGTCAACAAAATCCTGTCAAGCC
GATTCTGACAGCACATCAAAAATATCAAACATCGTGATCGGGTAGGGTTT
ATCCCAGAGATGCAAGAACCCCCCCACCAGTCAATAAAGGTAGTGCCTCT
GGGACGGTTTGAATATGTAATGTCCTTCATACACTCATGATTTGAACTCT
GATCACTACTGCATGGTTACACCATTTGTGGAGGTTGTAGAAACCAGGAA
GTGACTACCTGGAGGAAGCCGGTCACTGGGGAGCGGGTCCTTGTGAATAT
GCATTTATGGCTACTTCCTAAAACATTTTGTTTCTTGGTTAGCCATGAAA
TAAAACAACTCTCCTCTGCTTCACATTTCCATTATCATAATGTTTTGCCC
AATATTTGTGAGGCCTATCAGCTATGTCCCAAATTATTTTAAAACGTAAG
CTTTATTATCC
ATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAGTTCATTGGCAATAGTTGCTGTGTG
CAGCAACATTGTATTACAGTAATAATCTGGACTGTAGCGGAGCTGGCTAA
TTCATTAAGTGGGAGTGCATGTTTATCAGTGGTAGGAGTTGACATCCATG
TTTATGCTTCCTTTCCCTCCTTCCCTCTCAACTTTATTACTCATATGCAA
CATGTCTAACTCACACCTCTTCTGCAGGATGCAGTGCAGGCAGGAATTAA
CTCGGGGACAGCTATGTCAAGAGGATTGTATCAACCAGCAACAATCTTTA
TGGGCCGCCAAATGTCAGCCATCTCAAGCATTGAAGATTTCAGTACAGAG
CTGAAATCTAACCATCCCCCCACCAACTTTTCAATCTCTGACCCACATTC
ACACCAACAGACAGCCCAGAGCAGCTGTGTGACAGACAGCTGTGTAGTGC
AGACTAATGGTGACACGCAGTGCTTAACTAAGTCTGACAAAATACATGGA
AAGACATCTCTTCAGACTGGTGAGAAGGCGCCAGTCACAAGCTATGTATT
GTCTGCAGAAGAACAAACTCATTGCTTGGAGATAGGATGCAGCACACTGC
ACAGTATGAGTAATTTATCCGAATGCAAATTGCCTGCTTGACTCCATTCC
TCGTTACTGGATTCGATATGCTCCGAGAATTGCATCCCTGATTATAAGCG
TGACATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_p06.g1 MSMg01no327_p06.g1 CHROMAT_FILE:
MSMg01no327_p06.g1 PHD_FILE: MSMg01no327_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:57 2005
         (341 letters)



>mm_chr2_146714351_146715091
          Length = 741

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagttcattggcaatagttgctgtgtgcagcaacattgtattacagtaataatctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagttcattggcaatagttgctgtgtgcagcaacattgtattacagtaataatctgga 260

                                                                       
Query: 61  ctgtagcggagctggctaattcattaagtgggagtgcatgtttatcagtggtaggagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtagcggagctggctaattcattaagtgggagtgcatgtttatcagtggtaggagttg 320

                                                                       
Query: 121 acatccatgtttatgcttcctttccctccttccctctcaactttattactcatatgcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatccatgtttatgcttcctttccctccttccctctcaactttattactcatatgcaac 380

                                                                       
Query: 181 atgtctaactcacacctcttctgcaggatgcagtgcaggcaggaattaactcggggacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtctaactcacacctcttctgcaggatgcagtgcaggcaggaattaactcggggacag 440

                                                                       
Query: 241 ctatgtcaagaggattgtatcaaccagcaacaatctttatgggccgccaaatgtcagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgtcaagaggattgtatcaaccagcaacaatctttatgggccgccaaatgtcagcca 500

                                                    
Query: 301 tctcaagcattgaagatttcagtacagagctgaaatctaac 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcaagcattgaagatttcagtacagagctgaaatctaac 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)